Protein Alignment ssx and Pabpc5

DIOPT Version :10

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001103836.1
• Gene: Pabpc5 / 688518
• RGDID: 1587661
• Length: 382
• Species: Rattus norvegicus
• Alignment Length: 248
• Identity: 66/248 - (26%)
• Similarity: 105/248 - (42%)
• Gaps: 62/248 - (25%)

  Fly    89 RTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK 153
            ::...|:.|..|.:.:.:|.|:.|||..|.|.:||::.|  ...|.||.:|.:.:.:.:..||..
  Rat   102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWH 164

  Fly   154 LNGFYVRNK-----RLKVSYARPGGQSIKD----TNLYVINLSRNINDDMLDRIFSPYGLIVQRN 209
            :||..:.|:     |.|....|......:|    ||::|.|...:|:|:.|.::||.||......
  Rat   165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVK 229

  Fly   210 ILRDKLTGRPRGVAFVRYNKREEAQEAI-----------------------------------KA 239
            ::|| .||:.:|..||||...|.||:|:                                   |.
  Rat   230 VIRD-ATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKL 293

  Fly   240 LNNTVPEGGSQPIWV----------RLAEE---HGKAKAAQFMAQIGGGNGGG 279
            .:.|.|.|  .||::          :|.||   .|....|:.|.::|.|.|.|
  Rat   294 KDKTRPPG--VPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFG 344

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	62/239 (26%)
Pabpc5	NP_001103836.1	PABP-1234	22..>379	CDD:130689	66/248 (27%)