Protein Alignment ssx and LOC681410

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: XP_003751688.1
• Gene: LOC681410 / 681410
• RGDID: 1595414
• Length: 307
• Species: Rattus norvegicus
• Alignment Length: 358
• Identity: 84/358 - (23%)
• Similarity: 132/358 - (36%)
• Gaps: 80/358 - (22%)

  Fly    87 VDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAI 151
            ::.:....|.|..|....::..|...|...|.:..|.::.:.:|..|..:|||.|....:::.|:
  Rat     1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAM 65

  Fly   152 ----QKLNGFYVRNKRL--KVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNI 210
                ..::|..|..||.  :...||||..: |...|:|..|..::.:..|...||.:|.:.:..|
  Rat    66 AASPHAVDGNTVELKRAVSREDSARPGAHA-KVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEI 129

  Fly   211 LRDKLTGRPRGVAFVRYNKREEAQEA--IK---------ALNNTVPE-----GGSQPIWVRLAEE 259
            :.||.:|:.||..||.:...:.|.:|  :|         .:...||:     ||......|....
  Rat   130 IADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRG 194

  Fly   260 HGKAKAAQFMAQIGGGNGGGGG----GPPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQH 320
            .|:.:        |||.|||||    |....|.||       :|::.....:..
  Rat   195 GGRGR--------GGGGGGGGGRDQNGLAKGGGGG-------YNSYGGYGGYGA----------- 233

  Fly   321 PHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVN 385
                                 :........:..::..|.....|.:..|.....||....|.|
  Rat   234 ---------------------YGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGG-- 275

  Fly   386 MGMGMGMGMPIHGG---GGGGGGGGGGGGGGNF 415
             |.|...|...:.|   ||.|||||||.|||:|
  Rat   276 -GGGGSWGGRSNSGPYRGGYGGGGGGGYGGGSF 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	21/85 (25%)
		RRM_SF	179..257	CDD:302621	23/93 (25%)
LOC681410	XP_003751688.1	RRM1_hnRNPA0	5..83	CDD:240772	18/77 (23%)
		RRM2_hnRNPA0	99..178	CDD:241023	20/78 (26%)
		HnRNPA1	250..>269	CDD:288479	4/18 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010