DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and TRA2B

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_004584.1 Gene:TRA2B / 6434 HGNCID:10781 Length:288 Species:Homo sapiens


Alignment Length:179 Identity:41/179 - (22%)
Similarity:69/179 - (38%) Gaps:62/179 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA 169
            |:|:|..:||..|||....|:.|.::..|.|:.||.::...|:::|.::.||..:..:|::|.::
Human   130 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

  Fly   170 ---RPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKRE 231
               ||      .|....|.:.|           ..||...:|:.. |:  |..||     |:.|:
Human   195 ITKRP------HTPTPGIYMGR-----------PTYGSSRRRDYY-DR--GYDRG-----Y
DDRD 234

  Fly   232 EAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGG 280
            ....:.:                                  |||.||||
Human   235 YYSRSYR----------------------------------GGGGGGGG 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 22/70 (31%)
RRM_SF 179..257 CDD:302621 12/77 (16%)
TRA2BNP_004584.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114
RRM_TRA2 117..196 CDD:409798 20/65 (31%)
Linker 193..230 12/61 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 9/48 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 7/8 (88%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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