Protein Alignment ssx and elavl3

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: XP_012808614.1
• Gene: elavl3 / 594912
• XenbaseID: XB-GENE-490864
• Length: 363
• Species: Xenopus tropicalis
• Alignment Length: 281
• Identity: 101/281 - (35%)
• Similarity: 138/281 - (49%)
• Gaps: 65/281 - (23%)

  Fly    44 QQENGDGG----NGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDM 104
            |..||.|.    ||.:|   :.|:                           |.||||:|||||:|
 Frog    12 QASNGPGSVGILNGTNG---AADD---------------------------SKTNLIVNYLPQNM 46

  Fly   105 TDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA 169
            |..|..:||...|.|.:||::||..||.|.|||||:|...:|::.||..|||..::.|.:|||||
 Frog    47 TQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA 111

  Fly   170 RPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGR-PRGVAFVRYNKREEA 233
            ||...||:|.||||.:|.:.:|...::::||.||.|:...||.|::||. .|||.|:|::||.||
 Frog   112 RPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEA 176

  Fly   234 QEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHH 298
            :||||.||...|.|.|:||.|:.|....: |..|.:.
 Frog   177 EEAIKGLNGQKPLGASEPITVKFANNPSQ-KTGQALL---------------------------- 212

  Fly   299 NNHHHNNHHNPHMPPHHHQPQ 319
             .|.:......:..|.|||.|
 Frog   213 -THLYQTTARRYTGPLHHQTQ 232

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	43/79 (54%)
		RRM_SF	179..257	CDD:302621	37/78 (47%)
elavl3	XP_012808614.1	ELAV_HUD_SF	32..362	CDD:273741	93/258 (36%)
		RRM1_Hu	34..111	CDD:241094	39/76 (51%)
		RRM_SF	116..206	CDD:302621	41/90 (46%)
		RRM3_HuC	279..363	CDD:241099

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910