Protein Alignment ssx and PABPC3

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_112241.2
• Gene: PABPC3 / 5042
• HGNCID: 8556
• Length: 631
• Species: Homo sapiens
• Alignment Length: 203
• Identity: 61/203 - (30%)
• Similarity: 102/203 - (50%)
• Gaps: 29/203 - (14%)

  Fly    94 NLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFY 158
            |:.|....:||.|..|.:||...||..:.|:|.| ::|.|.|:|||.::...|::.|:.::||..
Human   192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255

  Fly   159 VRNKRLKVSYA-----------RPGGQSIKD-------TNLYVINLSRNINDDMLDRIFSPYGLI 205
            :..|::.|..|           |...|..:|       .||||.||...|:|:.|.:.|||:|.|
Human   256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI 320

  Fly   206 VQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA----- 265
            ....::.:  .||.:|..||.::..|||.:|:..:|..:.  .::|::|.||:...:.:|
Human   321 TSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEERQAYLTNE 381

  Fly   266 -AQFMAQI 272
             .|.||.:
Human   382 YMQRMASV 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	27/89 (30%)
		RRM_SF	179..257	CDD:302621	26/77 (34%)
PABPC3	NP_112241.2	PABP-1234	11..610	CDD:130689	61/203 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910