Sequence 1: | NP_569908.1 | Gene: | ssx / 31086 | FlyBaseID: | FBgn0024987 | Length: | 485 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012812298.1 | Gene: | hnrnpa1 / 496507 | XenbaseID: | XB-GENE-493963 | Length: | 362 | Species: | Xenopus tropicalis |
Alignment Length: | 338 | Identity: | 89/338 - (26%) |
---|---|---|---|
Similarity: | 128/338 - (37%) | Gaps: | 70/338 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAI----QKLN 155
Fly 156 GFYVRNKRL--KVSYARPGGQ-SIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTG 217
Fly 218 RPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGG 282
Fly 283 PPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHP 347
Fly 348 NNHHHNNNNN---NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGM-PIHGGGGG------ 402
Fly 403 GGGGGGGGGGGNF 415 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ssx | NP_569908.1 | RRM_SF | 93..173 | CDD:302621 | 26/83 (31%) |
RRM_SF | 179..257 | CDD:302621 | 18/77 (23%) | ||
hnrnpa1 | XP_012812298.1 | RRM1_hnRNPA1 | 12..92 | CDD:241205 | 24/75 (32%) |
RRM2_hnRNPA1 | 105..181 | CDD:241024 | 20/86 (23%) | ||
HnRNPA1 | <315..>334 | CDD:371635 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1202220at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |