DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and hnrnpa1

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_012812298.1 Gene:hnrnpa1 / 496507 XenbaseID:XB-GENE-493963 Length:362 Species:Xenopus tropicalis


Alignment Length:338 Identity:89/338 - (26%)
Similarity:128/338 - (37%) Gaps:70/338 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAI----QKLN 155
            |.|..|..:.||..|...|...|.:..|.:|||..:..|.|:|||.|.:..:.:.|:    .|::
 Frog    16 LFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEVDAAMSARPHKVD 80

  Fly   156 GFYVRNKRL--KVSYARPGGQ-SIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTG 217
            |..|..||.  :...:|||.. ::|  .::|..:..:..:..|...|..||.|....|:.|:.:|
 Frog    81 GRVVEPKRAVSR
EDSSRPGAHLTVK--KIFVGGIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSG 143

  Fly   218 RPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGG 282
            :.||.|||.:...:...:.:....:||.....:   ||      ||.:.|.||.:.|...|.||.
 Frog   144 KKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCE---VR------KALSKQEMASVSGSQRGRGGS 199

  Fly   283 PPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHP 347
            ....|.||      ..|::......|                             ..:|......
 Frog   200 GNFSGRGG------FGNDNFGGRGGN-----------------------------FSSNRGGGFG 229

  Fly   348 NNHHHNNNNN---NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGM-PIHGGGGG------ 402
            |..:..:..|   |....||..|:       .|.|.|.|...|.|.|.|. ..:|||.|      
 Frog   230 NRGYGGDGYNGFGNDGGYGGSPPY-------SGGNRGYGGGGGQGYGGGQGGGYGGGNGGYDGYN 287

  Fly   403 GGGGGGGGGGGNF 415
            |||.|.||.||||
 Frog   288 GGGSGFGGSGGNF 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 26/83 (31%)
RRM_SF 179..257 CDD:302621 18/77 (23%)
hnrnpa1XP_012812298.1 RRM1_hnRNPA1 12..92 CDD:241205 24/75 (32%)
RRM2_hnRNPA1 105..181 CDD:241024 20/86 (23%)
HnRNPA1 <315..>334 CDD:371635
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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