Protein Alignment ssx and pabpc1l

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001005062.1
• Gene: pabpc1l / 448615
• XenbaseID: XB-GENE-5742459
• Length: 629
• Species: Xenopus tropicalis
• Alignment Length: 288
• Identity: 81/288 - (28%)
• Similarity: 130/288 - (45%)
• Gaps: 51/288 - (17%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.|....:||.|:.|..:||..|...:.|:|.| .||.|.|:|||:|....:::.|:.::||.
 Frog   191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254

  Fly   158 YVRNKRLKVSYA-----RPGG-----QSIKD--------TNLYVINLSRNINDDMLDRIFSPYGL 204
            .|..:.:.|..|     |.|.     :.||.        .||||.||...|:||.|.:.|||||.
 Frog   255 EVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAA--- 266
            |....::.:  .|..:|..||.::..|||.:|:..:|..:.  .::|::|.||:...:.||.
 Frog   320 ITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIV--STKPLYVALAQRKEERKAILTN 380

  Fly   267 QFMAQIGGGNGGGGGGPPHMG----------PGGPMHPPHHHNNHHHNNHHNPH-MPPHHHQPQ- 319
            |:|.::.......|   |.:|          |..|..|        :...::|: :.|....||
 Frog   381 QYMQRLATMRAMPG---PLLGSFQQPANYFLPAMPQPP--------NRTFYSPNPVAPVRQAPQW 434

  Fly   320 --HPHQHPQHHPQLHHMQHHHPNNHNNN 345
              |..:.||:.|....|:...|...::|
 Frog   435 TSHQSRPPQYQPPAPLMRAVPPRRMSSN 462

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/84 (33%)
		RRM_SF	179..257	CDD:302621	27/77 (35%)
pabpc1l	NP_001005062.1	PABP-1234	11..612	CDD:130689	81/288 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910