Protein Alignment ssx and Ref1

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Alignment Length: 290
• Identity: 62/290 - (21%)
• Similarity: 94/290 - (32%)
• Gaps: 99/290 - (34%)

  Fly    36 DDDSNGNMQQENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYL 100
            ||.......|:......||.|                |...:.|||:......|..|.
  Fly    10 DDIIKSTRSQKKPQAARGGPG----------------GARKTGGQQRFAGGARRGGAN------- 51

  Fly   101 PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL----------- 154
                         :|..|.....:::..:.|.:.|              |:||.
  Fly    52 -------------AGGSPRKPGSVLKGPRGGVAAG--------------AVQKAKFPRGDVNSAW 89

  Fly   155 -NGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGR 218
             :..|...||..|     ||.| ..|.|.|.||...:::..:..:|:.:|.|.:..:..|: :||
  Fly    90 KHDMYDGPKRGAV-----GGGS-GPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGR 147

  Fly   219 PRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLA-----------------EEHGKAKAA 266
            ..|.|.|.:.:|.:|.:|||..:. ||..| :|:.::||                 ...|.....
  Fly   148 SLGTADVIFERRADALKAIKQYHG-VPLDG-RPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPT 210

  Fly   267 QFMAQIGGGNGGGG---------GGPPHMG 287
            .|  :.|||..||.         ||.|..|
  Fly   211 SF--KRGGGQAGGTARRGFKRPVGGKPAAG 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	11/91 (12%)
		RRM_SF	179..257	CDD:302621	23/77 (30%)
Ref1	NP_651968.1	RRM	<108..>187	CDD:223796	25/81 (31%)
		RRM_THOC4	109..183	CDD:241124	23/76 (30%)
		FoP_duplication	214..>265	CDD:290576	9/25 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910