DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and pabpc1b

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_957176.1	Gene:	pabpc1b / 393856	ZFINID:	ZDB-GENE-050308-1	Length:	634	Species:	Danio rerio

Alignment Length:	186	Identity:	60/186 - (32%)
Similarity:	102/186 - (54%)	Gaps:	13/186 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 QQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESD 146
            |:...:.::...|:.|..|.:.:.::.||:.||..|.|.:||::.| :.| |.|||||.::|:..
Zfish    88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEA 150

  Fly   147 SEDAIQKLNG--------FYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYG 203
            :|.||:|:||        |..|.|..|...|..|.::.:.||:|:.|...:::||.|..|||.||
Zfish   151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYG 215

  Fly   204 LIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEE 259
            ..:...::.|: .|:.||..||.:.:.|:||.|:..:|.  .|...:.|:|..|::
Zfish   216 NAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNG--KEMNGKLIYVGRAQK 268

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	31/87 (36%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	26/77 (34%)
pabpc1b	NP_957176.1	PABP-1234	11..613	CDD:130689	60/186 (32%)
		RRM1_I_PABPs	12..91	CDD:240824	1/2 (50%)
		RRM2_I_PABPs	97..172	CDD:240825	27/76 (36%)
		RRM3_I_PABPs	190..269	CDD:240826	27/82 (33%)
		RRM4_I_PABPs	293..370	CDD:240827
		PABP	545..612	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910