DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ssx and hfp

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_525123.2	Gene:	hfp / 38173	FlyBaseID:	FBgn0028577	Length:	637	Species:	Drosophila melanogaster

Alignment Length:	288	Identity:	54/288 - (18%)
Similarity:	109/288 - (37%)	Gaps:	68/288 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    22 GSGDNVGRDDGTDDDDDSNG--NMQQENGDGGNGGDGQ-----------EHSGD----------- 62
            ||.|...|...:||..:.:.  ..::...|.|...|.:           :.:||
  Fly     2 GSNDRASRSPRSDDQREISDMPATKRTRSDSGKSTDSKIPYLSQPLYDLKQTGDVKFGPGTRSAL 66

  Fly    63 ------------EEQH--------HSQDNE-----GNDNSAGQQQQM----QQVDRTSATNLI-- 96
                        .|||        ::.:..     .....|.||||:    .||.|..|..|:
  Fly    67 LGLLGGALPKLSSEQHDLVSKAKKYAMEQSIKMVLMKQTLAHQQQQLATQRTQVQRQQALALMCR 131

  Fly    97 --INYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYV 159
              :..:..::.:..:...|:..|||.:..:..|..|....|:.||:|:....::.|::::||..:
  Fly   132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALM 196

  Fly   160 RNKRLKVSYA--RPGGQSIKD---------TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRD 213
            ..:.:||...  .|..|.:.|         ..:||.::..:::::.:..:|..:|.|:...:.:.
  Fly   197 GGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQG 261

  Fly   214 KLTGRPRGVAFVRYNKREEAQEAIKALN 241
            ......:|..|:.|..::...|||.::|
  Fly   262 TSLHTHKGYGFIEYANKQAMDEAIASMN 289

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	17/85 (20%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	12/63 (19%)
hfp	NP_525123.2	half-pint	10..637	CDD:130706	50/280 (18%)
		RRM1_PUF60	130..205	CDD:240816	15/74 (20%)
		RRM2_PUF60	227..303	CDD:240817	12/63 (19%)
		RRM3_UHM_PUF60	536..636	CDD:241092
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439566
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840