DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and hnrnpa1b

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_956398.1 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:422 Species:Danio rerio


Alignment Length:398 Identity:104/398 - (26%)
Similarity:148/398 - (37%) Gaps:103/398 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 GNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYG 137
            |..:..||.::.:|:.:     |.|..|..:.||..|...|...|.:..|.:|:|..|..|.|:|
Zfish    18 GRMSKEGQPREPEQLRK-----LFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFG 77

  Fly   138 FVDYKTESD---SEDA-IQKLNGFYVRNKRL--KVSYARP-GGQSIKDTNLYVINLSRNINDDML 195
            ||.|.:..:   |.|| ..|::|..|..||.  :...::| ...::|  .::|..:..:..::.|
Zfish    78 FVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSREDSSKPFAHTTVK--KIFVGGIKDDTEENHL 140

  Fly   196 DRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEH 260
            ...|..:|.|....|:.|..||..||.|||.::..:.....:....:||.....:   ||     
Zfish   141 RDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCE---VR----- 197

  Fly   261 GKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHP 325
             ||.:.|.||..|.|.|||||     |.||..:  .:.||..:||...                 
Zfish   198 -KALSKQEMANTGRGGGGGGG-----GGGGNFN--RYGNNGGYNNDFG----------------- 237

  Fly   326 QHHPQLHHMQHHHPNNHNNNHPNNHHHNN-----------------NNNNHHNMGG--------- 364
                     ......|.:.........||                 ||||....||         
Zfish   238 ---------GGGGGGNRDGYFGRGGRGNNFGGGGGGGGYGGGGDCYNNNNGFGGGGYGGGGGNGG 293

  Fly   365 --PHPHHMQQMHPMGMNMGMGV-NMGMGMGMGMPIHGGGG----------------GGGGGGGG- 409
              |..:...:.:..|...|.|. |.|.|.|.|....||||                |||||||| 
Zfish   294 GSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYNNYNNGNGNFGGGNFGGGGGGGGN 358

  Fly   410 -GGGGNFH 416
             |||||::
Zfish   359 SGGGGNYN 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 27/86 (31%)
RRM_SF 179..257 CDD:302621 18/77 (23%)
hnrnpa1bNP_956398.1 RRM <19..187 CDD:223796 45/174 (26%)
RRM_SF 31..111 CDD:302621 27/84 (32%)
RRM2_hnRNPA1 124..200 CDD:241024 20/86 (23%)
HnRNPA1 367..>387 CDD:288479 104/398 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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