DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and pabpc1l

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_956133.1 Gene:pabpc1l / 327625 ZFINID:ZDB-GENE-030131-5836 Length:620 Species:Danio rerio


Alignment Length:211 Identity:59/211 - (27%)
Similarity:101/211 - (47%) Gaps:23/211 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 GNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYG 137
            |:..|..:::..........||:.|....:|:...:|.|:|:..|...:..:|.| :.|.|.|:|
Zfish   171 GHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFG 234

  Fly   138 FVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA-----RPGG-------------QSIKDTNLYVI 184
            ||::....|:..|:.::||..:..:.|.|..|     |.|.             |..:..||||.
Zfish   235 FVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVK 299

  Fly   185 NLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGS 249
            ||..:|:|:.|.:.|:|||.|....::.|  .|..||..||.::..|||.:|:..:|..:.  .:
Zfish   300 NLDDSIDDEKLRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAVTEMNGRIV--ST 360

  Fly   250 QPIWVRLAEEHGKAKA 265
            :|::|.||:...:.||
Zfish   361 KPLYVALAQRKEERKA 376

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 24/84 (29%)
RRM_SF 179..257 CDD:302621 27/77 (35%)
pabpc1lNP_956133.1 PABP-1234 11..610 CDD:130689 59/211 (28%)
RRM1_I_PABPs 12..91 CDD:240824