Protein Alignment ssx and syncrip

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_999861.1
• Gene: syncrip / 326663
• ZFINID: ZDB-GENE-030131-4862
• Length: 630
• Species: Danio rerio
• Alignment Length: 459
• Identity: 82/459 - (17%)
• Similarity: 142/459 - (30%)
• Gaps: 184/459 - (40%)

  Fly    90 TSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
            |..|.:.:..:|:|:.:.||...|...|||...::|.|..:|.:.||.|:.:.|:..:::|::..
Zfish   159 TVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKLC 223

  Fly   155 NGFYVR------------NKRLKVS---------------------------YARPGGQS----- 175
            |...:|            |.||.|.                           |.:|..:.
Zfish   224 NNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGF 288

  Fly   176 -------------------------------------IKDTN---------LYVINLSRNINDDM 194
                                                 |:|.:         |:|.||:.::.:::
Zfish   289 CFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEI 353

  Fly   195 LDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGS-QPIWVRLAE 258
            |::.|..:|.:.:...|:|        .|||.:|.|:.|.:|:..:|....||.. :.::.:..:
Zfish   354 LEKAFGQFGNLERVKKLKD--------YAFVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKPPD 410

  Fly   259 EHGKAKAAQFMAQIGGGNGGGGG-----------GPPHMGP-----------GGPMHPPHHHNNH 301
            :..|.:.||..|          .           |||.|.|           ||..:||.::...
Zfish   411 QKRKERKAQRQA----------AKTQMYDDYYYYGPPQMPPPARGRGRGASRGGYSYPPDYYGYE 465

  Fly   302 HHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPH 366
            .:.:::.        ...|.::.....|...:.....|........:..            ||..
Zfish   466 DYYDYYG--------YDYHNYRGGYDDPYFGYDDFQAPARGRGGRGSAR------------GGTS 510

  Fly   367 PHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGGGGGGG---------------------GGGGG 410
            |..           |.|.:...|.. |.|..||.|.|.|                     |..||
Zfish   511 PAR-----------GRGASAPRGRA-GFPQRGGAGAGPGASRGLRGGARGGVLPRGRGVRGARGG 563

  Fly   411 GGGN 414
            .|||
Zfish   564 RGGN 567

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	25/118 (21%)
		RRM_SF	179..257	CDD:302621	19/87 (22%)
syncrip	NP_999861.1	hnRNP-R-Q	103..622	CDD:273732	82/459 (18%)
		RRM1_hnRNPQ	161..239	CDD:240927	19/77 (25%)
		RRM2_hnRNPQ	241..325	CDD:240933	6/83 (7%)
		RRM3_hnRNPQ	337..408	CDD:240939	19/78 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910