DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and elavl1a

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	XP_005171324.1	Gene:	elavl1a / 30736	ZFINID:	ZDB-GENE-990415-245	Length:	340	Species:	Danio rerio

Alignment Length:	211	Identity:	88/211 - (41%)
Similarity:	127/211 - (60%)	Gaps:	0/211 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    75 DNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFV 139
            |.|.|.:..|......|.||||:|||||:|:..||.:|||..|.:.:.|::||...|:|.|||||
Zfish    16 DMSNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 80

  Fly   140 DYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGL 204
            :|...:|:|.||..|||..:::|.:|||||||...||||.|||:..|.:.:....::.:|..||.
Zfish    81 NYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGR 145

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFM 269
            |:...:|.|:.:|..|||||:|::||.||::|||.||...|.|.::.:.|:.|....:.|..|.:
Zfish   146 IINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVI 210

  Fly   270 AQIGGGNGGGGGGPPH 285
            .|:........|||.|
Zfish   211 PQVYHQQSRRFGGPVH 226

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	42/79 (53%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	29/77 (38%)
elavl1a	XP_005171324.1	ELAV_HUD_SF	31..340	CDD:273741	84/196 (43%)
		RRM1_Hu	33..110	CDD:241094	38/76 (50%)
		RRM2_HuR	120..203	CDD:241217	30/82 (37%)
		RRM3_HuR	257..340	CDD:241097
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000313
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.910