DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and Pabpc4

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	XP_006238860.1	Gene:	Pabpc4 / 298510	RGDID:	1305015	Length:	660	Species:	Rattus norvegicus

Alignment Length:	251	Identity:	70/251 - (27%)
Similarity:	115/251 - (45%)	Gaps:	40/251 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.|....:::.|..|..|||..|...:.|:|||. :|.|.|:|||.|:...|:..|::::||.
  Rat   191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGK 254

  Fly   158 YVRNKRLKVSYARPGGQ------------------SIKDTNLYVINLSRNINDDMLDRIFSPYGL 204
            .:..|.:.|..|:...:                  ..:..|||:.||...|:|:.|.:.|||:|.
  Rat   255 EMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---A 266
            |....::.:  .||.:|..||.::..|||.:|:..:|..:.  ||:|::|.||:...:.||   .
  Rat   320 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYVALAQRKEERKAHLTN 380

  Fly   267 QFMAQIGGGN-------------GGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNP 309
            |:|.::.|..             ..||...|.: |.....||::..|.......||
  Rat   381 QYMQRVAGMRALPANAILNQFQPAAGGYFVPAV-PQAQGRPPYYTPNQLAQMRPNP 435

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	27/79 (34%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	27/77 (35%)
Pabpc4	XP_006238860.1	PABP-1234	11..640	CDD:130689	70/251 (28%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825
		RRM3_I_PABPs	190..269	CDD:240826	27/78 (35%)
		RRM4_I_PABPs	293..370	CDD:240827	29/80 (36%)
		PABP	572..639	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910