DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and Pabpc4l

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_001099899.1	Gene:	Pabpc4l / 295010	RGDID:	1559517	Length:	370	Species:	Rattus norvegicus

Alignment Length:	184	Identity:	53/184 - (28%)
Similarity:	98/184 - (53%)	Gaps:	21/184 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    94 NLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFY 158
            |:.|..|.:.:.::.||..||..|.|.:.|:|.| :.| |.|||||.|:.:..::.||:::||..
  Rat    99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTD-EEG-SKGYGFVHYQDQRAADRAIEEMNGKL 161

  Fly   159 VRNKRLKVSYARPGGQSIKD------------TNLYVINLSRNINDDMLDRIFSPYGLIVQRNIL 211
            :|:..|.|:..:    |.||            ||:|:.|...:::|:.|..:||.||..:...::
  Rat   162 LRDSTLFVARFK----SRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVM 222

  Fly   212 RDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA 265
            :| .:|:.:...||.::..:.|:.|::.:|.....|  |.|:|..|::..:.:|
  Rat   223 KD-ASGKSKRFGFVSFDSHKAAKNAVEDMNGRDING--QTIFVGRAQKKVERQA 273

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	27/78 (35%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	21/77 (27%)
Pabpc4l	NP_001099899.1	ELAV_HUD_SF	11..262	CDD:273741	50/171 (29%)
		RRM1_I_PABPs	11..89	CDD:240824
		RRM2_I_PABPs	96..171	CDD:240825	27/73 (37%)
		RRM3_I_PABPs	189..268	CDD:240826	22/81 (27%)
		RRM_SF	293..369	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910