DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and Pabpc6

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_001099678.1	Gene:	Pabpc6 / 292295	RGDID:	1311201	Length:	643	Species:	Rattus norvegicus

Alignment Length:	381	Identity:	97/381 - (25%)
Similarity:	156/381 - (40%)	Gaps:	72/381 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    46 ENGDGGNGGDGQEHSGDEEQHHSQDNEG---NDNSAGQQQQMQQVDRTSA--------TNLIINY 99
            |||..|.|....| :.:|.:...:...|   ||......:...:.||.:.        ||:.|..
  Rat   134 ENGSKGYGFVHFE-TQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKN 197

  Fly   100 LPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRL 164
            |.:||.|..|.:|||..||..:.|:|.| ::|.|.|:|||.::...|:..|:.::||..:..|::
  Rat   198 LGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261

  Fly   165 KVSYAR--------------------------PGGQSIK--DTNLYVINLSRNINDDMLDRIFSP 201
            .|..|:                          |..:|::  ..||||.||...|:|:.|.:.|||
  Rat   262 YVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSP 326

  Fly   202 YGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLA---EEHGKA 263
            :|.|....:..:  .||.:|..||.::..|||.:|:..:|..:.  .::|::|.||   ||....
  Rat   327 FGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEERQAH 387

  Fly   264 KAAQFMAQIGG----GNGGGGGGPPHMGPGG----PMHPPHHHNNHHHNNHHNPHMPPHHHQPQH 320
            .:.|:|.::..    .|.|.....|..|..|    ...|..:...::..|......|......|.
  Rat   388 LSNQYMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSAQG 452

  Fly   321 PHQHPQHHPQLHHMQHH-HPNN----HNNNHPNN----HHHNNNNNNHHNMGGPHP 367
            ...||     ..:|... ||:|    .:.:.|.:    .|...:.:.  .|.||||
  Rat   453 TRAHP-----FQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTST--QMMGPHP 501

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	30/105 (29%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	26/77 (34%)
Pabpc6	NP_001099678.1	PABP-1234	11..622	CDD:130689	97/381 (25%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825	10/38 (26%)
		RRM3_I_PABPs	190..269	CDD:240826	29/79 (37%)
		RRM4_I_PABPs	303..380	CDD:240827	28/80 (35%)
		PABP	555..621	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910