DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and Pabpc2

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_001099621.1	Gene:	Pabpc2 / 291615	RGDID:	1310759	Length:	630	Species:	Rattus norvegicus

Alignment Length:	264	Identity:	72/264 - (27%)
Similarity:	120/264 - (45%)	Gaps:	42/264 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    49 DGGNGGDGQEHSGDEE--QHHSQDNEG---NDNS--AGQ-----QQQMQQVDRTSA-TNLIINYL 100
            :.|:.|.|..|...||  :...:...|   ||..  .||     :::.:...||.. ||:.|...
  Rat   134 ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNF 198

  Fly   101 PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLK 165
            ...|.|:.|..||...|.:.:.|:|.| :.|.|.|:|||.::...|::.|:.::||..:..|.:.
  Rat   199 GDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIY 262

  Fly   166 VSYA------------------RPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILR 212
            |..|                  :..|...:..||||.||...|:|:.|.:.|||:|.|....::.
  Rat   263 VGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMT 327

  Fly   213 DKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA------AQFMAQ 271
            :  .||.:|..||.::..|||.:|:..:|..:.  .::|::|.||:...:.:|      .|.||.
  Rat   328 E--GGRSKGFGFVCFSSPEEATKAVSEMNGRIV--ATKPLYVALAQRKEERQAHLTNQYIQRMAS 388

  Fly   272 IGGG 275
            :..|
  Rat   389 VRSG 392

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	25/97 (26%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	26/77 (34%)
Pabpc2	NP_001099621.1	PABP-1234	11..609	CDD:130689	72/264 (27%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..171	CDD:240825	9/36 (25%)
		RRM3_I_PABPs	190..269	CDD:240826	25/79 (32%)
		RRM4_I_PABPs	293..370	CDD:240827	28/80 (35%)
		PABP	542..608	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910