Protein Alignment ssx and Pabpc1

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_032800.2
• Gene: Pabpc1 / 18458
• MGIID: 1349722
• Length: 636
• Species: Mus musculus
• Alignment Length: 201
• Identity: 61/201 - (30%)
• Similarity: 103/201 - (51%)
• Gaps: 26/201 - (12%)

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.|....:||.|..|..||...||..:.|:|.| ::|.|.|:|||.::...|::.|:.::||.
Mouse   191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

  Fly   158 YVRNKRLKVSYA-----------RPGGQSIKD-------TNLYVINLSRNINDDMLDRIFSPYGL 204
            .:..|::.|..|           |...|..:|       .||||.||...|:|:.|.:.|||:|.
Mouse   255 ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---A 266
            |....::.:  .||.:|..||.::..|||.:|:..:|..:.  .::|::|.||:...:.:|   .
Mouse   320 ITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEERQAHLTN 380

  Fly   267 QFMAQI 272
            |:|.::
Mouse   381 QYMQRM 386

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/90 (31%)
		RRM_SF	179..257	CDD:302621	26/77 (34%)
Pabpc1	NP_032800.2	PABP-1234	11..615	CDD:130689	61/201 (30%)
		CSDE1-binding. /evidence=ECO:0000250	166..289		30/98 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910