Protein Alignment ssx and rnp-9

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001359585.1
• Gene: rnp-9 / 182350
• WormBaseID: WBGene00007396
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 214
• Identity: 56/214 - (26%)
• Similarity: 103/214 - (48%)
• Gaps: 38/214 - (17%)

  Fly    76 NSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVD 140
            :||.:.....::|.:...::.:..|.:|:::..|.:.|:..|.::..|::||.:|..|.|||||.
 Worm    70 HSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVS 134

  Fly   141 YKTESDSEDAIQKLNGFYVRNKRLKVSY-ARPGGQSIKD---------------TNLYVINLSRN 189
            :..:.::|:||..:||.::..:.::.:: ||...:..:|               |::||.|:|:.
 Worm   135 FPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQ 199

  Fly   190 INDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN------------- 241
            ..|..|..:||.||.|.:..|.:   |.|   .|||||.|:|.|.:||..:|
 Worm   200 TTDADLRDLFSTYGDIAEVRIFK---TQR---YAFVRYEKKECATKAIMEMNGKEMAGNQVRCSW 258

  Fly   242 ---NTVPEGGSQPIWVRLA 257
               ..||.....|:.:.|:
 Worm   259 GRTQAVPNQALNPLPIDLS 277

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	22/80 (28%)
		RRM_SF	179..257	CDD:302621	29/93 (31%)
rnp-9	NP_001359585.1	RRM2_TIA1_like	88..162	CDD:240799	20/73 (27%)
		RRM3_TIA1_like	189..260	CDD:240800	26/76 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910