Protein Alignment ssx and hrpa-1

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001040945.1
• Gene: hrpa-1 / 177101
• WormBaseID: WBGene00001999
• Length: 347
• Species: Caenorhabditis elegans
• Alignment Length: 396
• Identity: 93/396 - (23%)
• Similarity: 134/396 - (33%)
• Gaps: 115/396 - (29%)

  Fly    75 DNSAGQQQQMQQVDRTSATNLIINYLPQDMTD---RELYNLFSGCGPINTCKIMRDFKTGYSFGY 136
            :|.:|.    ..::..:...:.:..|..:.||   ||.|:.|   |.|....:|||..|..|.|:
 Worm     9 ENGSGD----ASLEPENLRKIFVGGLTSNTTDDLMREFYSQF---GEITDIIVMRDPTTKRSRGF 66

  Fly   137 GFVDY--KTESDSEDAIQKLNGFYVRNKRLKVSYARP------GGQSIKDTNLYVINLSRNINDD 193
            |||.:  |||   .||..|.....:..|.:....|.|      ...::....|||..:..:..:|
 Worm    67 GFVTFSGKTE---VDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTED 128

  Fly   194 MLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAE 258
            ||...|:.||.:.:..|:.||.|.:|||..||.::..:...:.:...::.| .|....:...|::
 Worm   129 MLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 192

  Fly   259 EH--------------GKAKAAQFMAQIGGGNGGGGGGPP--------HMGPGGPMHPPHHHNNH 301
            :.              |:::..|.....|||.||||.|.|        :.||||.....:...|:
 Worm   193 DEMSKAQMNRDRETRGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNY 257

  Fly   302 HHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPH 366
                                                          ...............|||
 Worm   258 ----------------------------------------------GGGWGQQGGGGQGGWGGP- 275

  Fly   367 PHHMQQMHPMGMNMGMGVNMGMGM------------GMGMPIHGGGGGGGGG-----GGGGGGGN 414
                ||....|   |.|...|.|.            |.|.|..||||||.||     ||.||...
 Worm   276 ----QQQQGGG---GWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGGQSG 333

  Fly   415 FHHMAH 420
            ....||
 Worm   334 AQQWAH 339

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	27/90 (30%)
		RRM_SF	179..257	CDD:302621	20/77 (26%)
hrpa-1	NP_001040945.1	RRM1_hnRNPA_like	24..101	CDD:241022	26/82 (32%)
		RRM2_hnRNPA_like	115..187	CDD:240774	20/72 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920