DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssx and sup-26

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001254892.1 Gene:sup-26 / 175551 WormBaseID:WBGene00006331 Length:476 Species:Caenorhabditis elegans


Alignment Length:531 Identity:119/531 - (22%)
Similarity:189/531 - (35%) Gaps:145/531 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNM----------QQENGDGGNGGDG 56
            |::.:.|:.:|....||:.:.:.......:.......:|..|          ||:....|.....
 Worm    27 SSSHQHQNHQHYHSSSSNQQFNRPPPPPHNSQHHHHHNNSRMNASSAPQQQQQQQQPQQGQAPQQ 91

  Fly    57 QEHSGDEEQHHSQ-------DNE-------GNDNSAGQ------QQQMQQVDRTSATNLIINYLP 101
            |:....:.|:..|       .|.       ||.|..|:      .||.......|:|||.|..|.
 Worm    92 QQQGPPQHQYQQQRPFHGRVQNHMRGSGPFGNSNGYGRYTAPRGDQQHHDSTPLSSTNLYIRGLM 156

  Fly   102 QDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKV 166
            .:..|..|..:.|..|.|.:.|.:.|..|....||||||:::...:..|:..||     .:.::.
 Worm   157 PNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN-----TEGVQA 216

  Fly   167 SYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKRE 231
            ..|:...|....||||:.||..:..:.||:...:.:|:::...|||.. ..:.|||.|.|.:.:|
 Worm   217 QMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTP-DNQSRGVGFARMDSKE 280

  Fly   232 EAQEAIKALN----NTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPM 292
            :.:..|.|||    :|:.:.| ..:.::.|:...|:|                            
 Worm   281 KCEVIISALNGGRFDTMSKEG-PALLIKQADTGRKSK---------------------------- 316

  Fly   293 HPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNN 357
                     |..|  ||.|......||....:..:||...:.||:..|:..:             
 Worm   317 ---------HSMN--NPEMLQRMQYPQVYQSYYGYHPAAVYQQHYDVNSLAS------------- 357

  Fly   358 NHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMG--MGMPIHGGGGGGGGGGGGGGGGNFHHMAH 420
               .||             ||::|.|.....|.|  .|..::|...||.||.|.|.||.......
 Worm   358 ---QMG-------------GMHVGGGNPQANGGGDMYGAHMYGQNAGGQGGQGVGQGGQADESTI 406

  Fly   421 RGE--VF---------MLPLPICSRFPSQPHPVGNGICHSPNKNSRFRLSRRPQ--ASRTTIRYI 472
            .|:  ||         :..|.|.|                 |::|   |.::.|  |:|..|...
 Worm   407 NGQDNVFTPLLLSSLNLFSLSILS-----------------NQSS---LQKKTQCAAARAAINTH 451

  Fly   473 AHSVADPVPTP 483
            .| :..|:|.|
 Worm   452 VH-IVSPLPDP 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 23/79 (29%)
RRM_SF 179..257 CDD:302621 24/81 (30%)
sup-26NP_001254892.1 RRM1_MSSP 148..218 CDD:240689 22/74 (30%)
RRM2_MSSP 229..310 CDD:240690 24/82 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28916
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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