Protein Alignment ssx and pab-1

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001369814.1
• Gene: pab-1 / 172920
• WormBaseID: WBGene00003902
• Length: 646
• Species: Caenorhabditis elegans
• Alignment Length: 453
• Identity: 97/453 - (21%)
• Similarity: 158/453 - (34%)
• Gaps: 164/453 - (36%)

  Fly    89 RTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK 153
            |:.|.|:.|..|.:.:.::.:|:.||..|.|.:||:..| :.|:|.|||||.::||..:::||||
 Worm   116 RSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQK 179

  Fly   154 LNGFYV---------------RNKRLK-------------------------------------- 165
            :||..:               ||:.|.
 Worm   180 VNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEV 244

  Fly   166 ------------VSYARP-----GGQSIKDT---------------------------------- 179
                        |::|.|     ..|::.|:
 Worm   245 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAE 309

  Fly   180 --------NLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEA 236
                    ||||.||...::||.|.:.|..||.|....::.|: .||.:|..||.:.|.|||..|
 Worm   310 RMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSA 373

  Fly   237 IKALNNTVPEGGSQPIWVRLAE--EHGKAK-AAQFMAQIGG----GNGGGGG--GPPHMGPG--- 289
            :..:|:.:.  .|:|::|.:|:  |..:|: |:|:|.::..    ||..|..  .|...|||
 Worm   374 VTEMNSKMV--CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYV 436

  Fly   290 -GPMHPPHH----------------HNNHHHNNHHNPHMPPHHHQ-----PQHPHQHPQHHPQLH 332
             .||....:                .|.:...|.:.....|..:|     ||:....|:..||.:
 Worm   437 ANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPRGPPQQY 501

  Fly   333 HM------------QHHHPNNHNNNHPNNHHHNNNNNNHHN--MGGPHPHHMQQMHPMGMNMG 381
            :.            :..:|.....|.|..............  ...|.|:...|..|.|:.:|
 Worm   502 NQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIG 564

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	32/149 (21%)
		RRM_SF	179..257	CDD:302621	28/119 (24%)
pab-1	NP_001369814.1	PABP-1234	32..640	CDD:130689	97/453 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910