DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ssx and Pabpc1

DIOPT Version :9

Sequence 1:	NP_569908.1	Gene:	ssx / 31086	FlyBaseID:	FBgn0024987	Length:	485	Species:	Drosophila melanogaster
Sequence 2:	NP_599180.1	Gene:	Pabpc1 / 171350	RGDID:	619838	Length:	636	Species:	Rattus norvegicus

Alignment Length:	201	Identity:	61/201 - (30%)
Similarity:	103/201 - (51%)	Gaps:	26/201 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157
            ||:.|....:||.|..|..||...||..:.|:|.| ::|.|.|:|||.::...|::.|:.::||.
  Rat   191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254

  Fly   158 YVRNKRLKVSYA-----------RPGGQSIKD-------TNLYVINLSRNINDDMLDRIFSPYGL 204
            .:..|::.|..|           |...|..:|       .||||.||...|:|:.|.:.|||:|.
  Rat   255 ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---A 266
            |....::.:  .||.:|..||.::..|||.:|:..:|..:.  .::|::|.||:...:.:|   .
  Rat   320 ITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEERQAHLTN 380

  Fly   267 QFMAQI 272
            |:|.::
  Rat   381 QYMQRM 386

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/90 (31%)
ssx	NP_569908.1	RRM_SF	179..257	CDD:302621	26/77 (34%)
Pabpc1	NP_599180.1	PABP-1234	11..615	CDD:130689	61/201 (30%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825
		UNR-binding. /evidence=ECO:0000250	166..289		30/98 (31%)
		RRM3_I_PABPs	190..269	CDD:240826	27/78 (35%)
		RRM4_I_PABPs	293..370	CDD:240827	28/80 (35%)
		PABP	547..614	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910