DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssx and Elavl2

DIOPT Version :9

Sequence 1:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_036019590.1 Gene:Elavl2 / 15569 MGIID:1100887 Length:530 Species:Mus musculus


Alignment Length:182 Identity:87/182 - (47%)
Similarity:118/182 - (64%) Gaps:0/182 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 SATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLN 155
            |.||||:|||||:||..||.:||...|.|.:||::||..||.|.|||||:|....|:|.||..||
Mouse   207 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 271

  Fly   156 GFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPR 220
            |..::.|.:|||||||...||:|.||||..|.:.:....|:::||.||.|:...||.|::||..|
Mouse   272 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 336

  Fly   221 GVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQI 272
            ||.|:|::||.||:||||.||...|.|.::||.|:.|....:......::|:
Mouse   337 GVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQL 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 45/79 (57%)
RRM_SF 179..257 CDD:302621 36/77 (47%)
Elavl2XP_036019590.1 ELAV_HUD_SF 206..529 CDD:273741 87/182 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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