Protein Alignment ssx and Hnrnpab

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001041526.1
• Gene: Hnrnpab / 15384
• MGIID: 1330294
• Length: 332
• Species: Mus musculus
• Alignment Length: 368
• Identity: 74/368 - (20%)
• Similarity: 136/368 - (36%)
• Gaps: 72/368 - (19%)

  Fly    14 DEQSSDIEGSGDNVGRD---DGTDDDDDSNGNMQQENGDGGNGGDGQEHSGDEEQHHSQDNEGND 75
            :||..:..|:.:| |.:   :|....:.|..........|..||.....||::     ...||:.
Mouse     6 EEQPMETTGATEN-GHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQ-----NGAEGDQ 64

  Fly    76 NSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVD 140
            .:|.:.::       .|..:.:..|..|.:.::|.:.|:..|.:..|.|..|..||.|.|:||:.
Mouse    65 INASKNEE-------DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 122

  Fly   141 YKTESDSEDAI----QKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSP 201
            :|..|..|..:    .:|:|..:..|:.......|    :|  .::|..|:....::.:...|..
Mouse   123 FKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP----VK--KIFVGGLNPEATEEKIREYFGQ 181

  Fly   202 YGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGS-------QPIWVRLAEE 259
            :|.|....:..|....:.||..|:.:.:.:..::.::...:||  .||       ||..|...::
Mouse   182 FGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTV--SGSKCEIKVAQPKEVYQQQQ 244

  Fly   260 HGKAKAAQFMAQIGG------GNGGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNP-------HM 311
            :|.          ||      ||.|.|||.....            |..:.|:.|.       :.
Mouse   245 YGS----------GGRGNRNRGNRGSGGGQSQSW------------NQGYGNYWNQGYGYQQGYG 287

  Fly   312 PPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNN 354
            |.:......|:.:..:.|...:.|  ...|:..:.....|.||
Mouse   288 PGYGGYDYSPYGYYGYGPGYDYSQ--GSTNYGKSQRRGGHQNN 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	21/83 (25%)
		RRM_SF	179..257	CDD:302621	16/84 (19%)
Hnrnpab	NP_001041526.1	CBFNT	1..75	CDD:285369	15/81 (19%)
		RRM1_hnRNPAB	76..150	CDD:241201	20/73 (27%)
		RRM2_hnRNPAB	155..234	CDD:241028	15/86 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010