Protein Alignment ssx and Hnrnpa1

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001034218.1
• Gene: Hnrnpa1 / 15382
• MGIID: 104820
• Length: 373
• Species: Mus musculus
• Alignment Length: 352
• Identity: 87/352 - (24%)
• Similarity: 129/352 - (36%)
• Gaps: 83/352 - (23%)

  Fly    95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAI----QKLN 155
            |.|..|..:.||..|.:.|...|.:..|.:|||..|..|.|:|||.|.|..:.:.|:    .|::
Mouse    16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD 80

  Fly   156 GFYVRNKRL--KVSYARPGGQ-SIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTG 217
            |..|..||.  :....|||.. ::|  .::|..:..:..:..|...|..||.|....|:.|:.:|
Mouse    81 GRVVEPKRAVSREDSQRPGAHLTVK--KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143

  Fly   218 RPRGVAFVRYNKREEAQEAI---------------KALNNTVPEGGSQPIWVRLAEEHGKAKAAQ 267
            :.||.|||.::..:...:.:               |||:.......|       :.:.|::.:..
Mouse   144 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS-------SSQRGRSGSGN 201

  Fly   268 FMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLH 332
            |    |||.|||.||..:.|.||..........
Mouse   202 F----GGGRGGGFGGNDNFGRGGNFSGRGGFGG-------------------------------- 230

  Fly   333 HMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGV-NMGMGMGMGMPI 396
                   :.....:..:....|...|....||..|.:.......|.. |.|. |.|.|.|.....
Mouse   231 -------SRGGGGYGGSGDGYNGFGNDGGYGGGSPGYSGGSRGYGSG-GQGYGNQGSGYGGSGSY 287

  Fly   397 ----HGGGGGGGGGGGG---GGGGNFH 416
                :||||||.|||.|   ||||:::
Mouse   288 DSYNNGGGGGGFGGGSGSNFGGGGSYN 314

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	28/83 (34%)
		RRM_SF	179..257	CDD:302621	18/92 (20%)
Hnrnpa1	NP_001034218.1	RRM1_hnRNPA1	12..92	CDD:241205	26/75 (35%)
		RRM2_hnRNPA1	105..181	CDD:241024	16/77 (21%)
		HnRNPA1	310..345	CDD:288479	2/5 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010