Protein Alignment ssx and PABPC4L

DIOPT Version :9

• Sequence 1: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Sequence 2: NP_001108206.3
• Gene: PABPC4L / 132430
• HGNCID: 31955
• Length: 370
• Species: Homo sapiens
• Alignment Length: 194
• Identity: 55/194 - (28%)
• Similarity: 101/194 - (52%)
• Gaps: 15/194 - (7%)

  Fly    89 RTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK 153
            |:...|:.|..|.:.:.::.||..||..|.|.:.|:|.|.:.  |.||.||.::.:|.::.||::
Human    94 RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 156

  Fly   154 LNG--------FYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNI 210
            :||        |..|.|..|...|....::.:.||:|:.|...:::|:.|..:||.||..:...:
Human   157 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKV 221

  Fly   211 LRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEE--HGKAKAAQFMAQI 272
            :.|. :|:.:|..||.::..|.|::|::.:|.....|  |.|:|..|::  ..:|:..|...|:
Human   222 MTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDING--QLIFVGRAQKKVERQAELKQMFEQL 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssx	NP_569908.1	RRM_SF	93..173	CDD:302621	27/87 (31%)
		RRM_SF	179..257	CDD:302621	23/77 (30%)
PABPC4L	NP_001108206.3	RRM	10..>369	CDD:330708	55/194 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910