DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12773 and slc12a4

DIOPT Version :9

Sequence 1:NP_001284773.1 Gene:CG12773 / 31082 FlyBaseID:FBgn0024365 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_691291.2 Gene:slc12a4 / 562826 ZFINID:ZDB-GENE-090218-27 Length:1095 Species:Danio rerio


Alignment Length:611 Identity:152/611 - (24%)
Similarity:248/611 - (40%) Gaps:170/611 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TNSSEGNGN-------------GGRRTVDWQRFGLGGDEDGDV--AVTSFRQRTNNNTGGFVDLG 51
            |.||:|:||             ..:|...:.|.....:|:.|:  .|:|...|..|.|       
Zfish    42 TVSSDGHGNHKEDSPFLSSSDSASKRNDFYDRNLALFEEELDIRPKVSSLLSRLVNYT------- 99

  Fly    52 NEYTYAAGGHHASGANEIFAGEQGDKPWWRSNFFISQPVLFGTWDGVFTSCLINVFGVIVFLRSG 116
                     :...||.|....|..|    .|.....:....||..||:..||.|:||||:|||..
Zfish   100 ---------NVTQGAKEHEEAESAD----ASRRQAPKSPNMGTLMGVYLPCLQNIFGVILFLRLT 151

  Fly   117 WIVAQAGILNAVLIIF----CTVVIAL-VSVLSAIGICERCRVESGGVYFLIAHTLGSRFGGALG 176
            |||..||::.:.||:.    ||::.|: :|.::..|:     |.:||.||:|:.:||..||||:|
Zfish   152 WIVGTAGVVQSFLIVLMCCSCTMLTAISMSAIATNGV-----VPAGGAYFMISRSLGPEFGGAVG 211

  Fly   177 LLYCFGQAVGCALNVMGFGESM-----------------AGLVGLEGSKWAIRGFATAAVLLLGC 224
            |.:..|.....|:.::|..|..                 ||...:..:   :|.:.|..:.|:..
Zfish   212 LCFYLGTTFAAAMYILGAIEIFLKYLIPQAAIFHPADIHAGNGAMLNN---MRVYGTICLSLMAV 273

  Fly   225 INVAGVKWVIKLQFILLMILLISALDFMVGSFTS----------------------EASG----- 262
            :...|||:|.||..:.|..::||.:....|:..|                      :..|     
Zfish   274 VVFVGVKYVNKLASLFLACVIISIVSIYAGAVKSIFHPPEFPICMLGNRTLVRDLFDVCGKTVVV 338

  Fly   263 -------------------------------------GFNGWASGNFVENLWPKY---------- 280
                                                 |..|.|||...||:|..|          
Zfish   339 GNETVPSKLWKNFCTSDNISSAHCDEYFFHNNVTEIKGIPGLASGIIKENMWGDYMEKGQILEKA 403

  Fly   281 --------------------DDGYSWFRVFGVFFPTVTGVLSGINMSGDLRAPSTDIPNGTLAAF 325
                                |...|:..:.|:|||:.||:::|.|.|||||.....||.||:.|.
Zfish   404 KLPSVDVHGSMETFGFYVSADIATSFTLLVGIFFPSATGIMAGSNRSGDLRDAQKSIPIGTILAI 468

  Fly   326 GTSTFLYLVFVLFLGATCQRSFLYTDYMISVKVSAV--------HFLLLAGIYVSSMSSCLGAMY 382
            .|::.:|...|:..||..:...|...:..:|..:.|        .::::.|.:.|::.:.|.::.
Zfish   469 TTTSLVYFSSVVLFGACIEGVVLRDKFGDAVSKNLVVGTLSWPSPWVIVIGSFFSTVGAGLQSLT 533

  Fly   383 GTPRVLQSIAKESVIPGIDILGKGRGPNKVPLYAMAIVALVTVTFIIVGDINFLAPIVTMPFLLT 447
            |.||:||:|||:::||.:.:.|.|:. |..|.:|:.:..|:....|::..::.:|||::|.||:.
Zfish   534 GAPRLLQAIAKDNIIPFLRVFGHGKA-NGEPTWALLLTGLIAELGILIASLDMVAPILSMFFLMC 597

  Fly   448 YACIDYAYFALAQTFDIQEQREERFR 473
            |..::.|  ...||.........|||
Zfish   598 YLFVNLA--CAVQTLLRTPNWRPRFR 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12773NP_001284773.1 2a30 88..>456 CDD:273347 126/491 (26%)
slc12a4XP_691291.2 2a30 50..1095 CDD:273347 147/603 (24%)
SLC12 718..1095 CDD:281515
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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