DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp2A and tspan5

DIOPT Version :10

Sequence 1:NP_525037.1 Gene:Tsp2A / 31080 FlyBaseID:FBgn0024361 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_001072198.1 Gene:tspan5 / 779644 XenbaseID:XB-GENE-868310 Length:268 Species:Xenopus tropicalis


Alignment Length:257 Identity:58/257 - (22%)
Similarity:108/257 - (42%) Gaps:46/257 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 CVKYTLFCFNIVAWMISTALFALTVWLRAEPGFNDWLRILEAQSFYIGVYVLIGISIVMMAVSFL 82
            |:||.:|.||::.|::......:.:|..:|.|....:..:.....:..|::.:.:..||..:.|.
 Frog    14 CIKYFIFGFNVIFWLLGITFLGVGLWAWSEKGVLSNISSITDLGGFDPVWLFLVVGGVMFILGFA 78

  Fly    83 GCLSALMENTLAL---FVFVGTQVFGFIAIVAGSAVLLQFSTINSSLQPLLNVSLRGFVATSEYT 144
            ||:.||.|||..|   .||:|  :..|:.:.||....:....|...||..:|.::|.:  ..:..
 Frog    79 GCIGALRENTFLLKFFSVFLG--IIFFLELTAGVLAFVFKDWIKDQLQFFINNNIRAY--RDDID 139

  Fly   145 YSNYVLTMIQENIGCCGATGPWDY-LDL------------RQPLPSSC------RDTVSGNAFFN 190
            ..| ::...||...||||.|..|: |::            |..:|.||      .|.::....::
 Frog   140 LQN-LIDFTQEYWQCCGAFGADDWNLNIYFNCTDANASRERCGVPFSCCTKDPAEDVINTQCGYD 203

  Fly   191 ----------------GCVDELTWFFEGKTGWIVALAMTLGLLNV--ICAVMSFVL-VQAVK 233
                            |||.:...:.:.....:..:.:.:.||.:  ||...:.|. ::||:
 Frog   204 VRQKPELDQQETIHTKGCVPQFEKWLQDNLTIVAGVFIGIALLQIFGICLAQNLVSDIEAVR 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp2ANP_525037.1 Tetraspanin 19..230 CDD:459767 55/251 (22%)
tspan5NP_001072198.1 Tetraspanin 15..258 CDD:459767 54/247 (22%)
TM4SF9_like_LEL 113..233 CDD:239412 23/122 (19%)

Return to query results.
Submit another query.