DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp2A and Tspan9

DIOPT Version :10

Sequence 1:NP_525037.1 Gene:Tsp2A / 31080 FlyBaseID:FBgn0024361 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_001101360.1 Gene:Tspan9 / 312728 RGDID:1304740 Length:330 Species:Rattus norvegicus


Alignment Length:239 Identity:54/239 - (22%)
Similarity:98/239 - (41%) Gaps:36/239 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 CVKYTLFCFNIVAWMISTALFALTVWLRAEPG----FNDWLRILEAQSFYIGVYVLIGISIVMMA 78
            |:||.:|.||::.|:....|..:.:||....|    |:.....|.|.:      ::|.|..::|.
  Rat    99 CLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAAN------LVIAIGTIVMV 157

  Fly    79 VSFLGCLSALMENTLALFVFVGTQVFGFIAIVAGSAVLLQF----STINSSLQPLLNVSLRGFVA 139
            ..|||||.|:.||...|..|.   :...|.::|...:|:.|    ..:|.:.:..|...|..:..
  Rat   158 TGFLGCLGAIKENKCLLLSFF---IVLLIILLAELILLILFFVYMDKVNENAKQDLKEGLLLYNT 219

  Fly   140 TSEYTYSNYVLTMIQENIGCCGATGPWDYLDL-----RQPLPSSC---------RDTVSGNAFFN 190
            .:.....| ...:||..:.|||.|   ||.|.     ...:|..|         |::.: ..:..
  Rat   220 ENNVGLKN-AWNIIQAEMRCCGVT---DYTDWYPVLGENTVPDRCCMENSQGCGRNSTT-PLWKT 279

  Fly   191 GCVDELTWFFEGKTGWIVALAMTLGLLNVICAVMSFVLVQAVKK 234
            ||.:::..:|:.....:..:.|...::.::....|..|.|.:.:
  Rat   280 GCYEKVKLWFDDNKHVLGTVGMCFLIMQILGMAFSMTLFQHIHR 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp2ANP_525037.1 Tetraspanin 19..230 CDD:459767 52/232 (22%)
Tspan9NP_001101360.1 Tetraspanin 100..319 CDD:459767 52/232 (22%)
NET-5_like_LEL 196..293 CDD:239418 19/101 (19%)

Return to query results.
Submit another query.