DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11403 and xpd-1

DIOPT Version :9

Sequence 1:NP_569898.1 Gene:CG11403 / 31072 FlyBaseID:FBgn0026876 Length:861 Species:Drosophila melanogaster
Sequence 2:NP_001348650.1 Gene:xpd-1 / 175190 WormBaseID:WBGene00021752 Length:755 Species:Caenorhabditis elegans


Alignment Length:879 Identity:182/879 - (20%)
Similarity:341/879 - (38%) Gaps:229/879 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RLDTPGAQEFGFPYSPYEIQEQL--MQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWLARHE 71
            :||..|.:.. |||. |...||:  |:|:.:.|:....|:.|.|:||||:::|.           
 Worm     2 QLDIDGLKVL-FPYD-YVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLL----------- 53

  Fly    72 ELVRTEMLARIRGVEQELAKLKEESEQSSNWLESQGKSRAQRAELLRLQHLQALLDKQEQQLDQI 136
            .||...|::                                                        
 Worm    54 SLVLAYMIS-------------------------------------------------------- 62

  Fly   137 RKGAKKHKRQGRVHPGKLEELEKDLDPESDSDSEHETADGPQEAAEDRYRPVQIFFCSRTHSQLA 201
                         :|.||::|                                 .:||||..::.
 Worm    63 -------------YPDKLDKL---------------------------------VYCSRTIPEIE 81

  Fly   202 QIVAELR------KTPHGQSVR--SISLGSRQQLCGNPAVRKLKHVGLMNERCLDMATKKARPNP 258
            :.|.|::      :...||.|.  ::::.:|:.||.|..|..|:....::..|..:....||...
 Worm    82 KCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEPVAALRFGNTVDSACQKLTASSARQKR 146

  Fly   259 SKKSRLTAEANSRCP----FKAASLVESLRDLALTEPL-----DIEELANEGTACGGCSYYASRS 314
            ::...|.|     |.    |:|.|:           |:     ::|:|.:.|.....|.|:.:|.
 Worm   147 AEDPTLEA-----CDYFENFEAKSV-----------PMQNGVWNLEDLRSLGREKKICPYFTARQ 195

  Fly   315 AVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEAHNLLDSVAQLHGSEISRQQLERAKVQ 378
            |:..|.:::..|..:|.......:.... :.|:|:.|||||:.:...:.....||::..:||   
 Worm   196 AINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNVCIESMSVAISQKNADRA--- 257

  Fly   379 ISGYKDHFQKRFTTKNLLKINQIIFIIRRLLKILDQRKELQSNGCSMMRTYELTAEGDFFNIDLC 443
                            |.::..:..::.|:         ..||...:...|:...||        
 Worm   258 ----------------LQELQSLEGVVNRM---------KSSNSEKLQSEYDKLVEG-------- 289

  Fly   444 ELLDFCARTRFARKVQGRADRMEREPRPSE--NQAPVSTARS-----LILQRLASEQKLKEKTKS 501
                 ..||   .:.:...:|:.....|.:  ::|.....|.     |.|:|.....:.:.:|..
 Worm   290 -----LKRT---ERERANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQ 346

  Fly   502 VKRRVEDINKEDKAEELQEQQKPTKKPVEEVAPSPIRPL-------------LAFLETLTSNAED 553
            |.........:|..:.:..::||.:...|.:: :.::.|             :..|.||.|....
 Worm   347 VLIESPAAFMKDILDRMCIERKPMRFCAERLS-NLVKTLEITDNGDVWALSQVTTLCTLVSTYSK 410

  Fly   554 G-RILVDPVGGT-LKYILL---DPAEQFADIVAEARAIVIAGGTMQPTKELKEQLFTGCHDRLVE 613
            | .::|:|..|: |..|.|   |.:.....:::..::::|..||:.|.:...:.|   ..|..|.
 Worm   411 GFSVIVEPQDGSQLAVITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVL---DFDPSVI 472

  Fly   614 RFYNHVVANDAILPFVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSYE 678
            ..:...:|...:.|.|::.|.....::.:|..|....::|....::..:..:||.|:|.|..||.
 Worm   473 ASFTMTLARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYL 537

  Fly   679 YLDKVYKYLEQSGTLETISGRKSVFREVSGSAE--QLLDNYALAIKRPASYGALLLSVVGGKLSE 741
            |::.|.....:...::.:...|.:|.|.:.:.|  ..|:.|..|.  .:..||:|.||..||:||
 Worm   538 YMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEAC--DSGRGAVLFSVARGKVSE 600

  Fly   742 GLNFADDLGRAVLVVGLPYSNSLSPELRQRMQHLDEKLGPGAGNEYYENLCVKAVNQCIGRAVRH 806
            |::|:..|||.|:::|:||..:.|..||.|:::|.::.|. ..|::.....::...||:|||:|.
 Worm   601 GIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGI-KENDFLTFDAMRHTAQCMGRALRS 664

  Fly   807 IKDYACVYLLDKRFADPKIRGKLPKWISRHIVEA 840
            ..||..:...||||:....|||||:|:..::..|
 Worm   665 KTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPA 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11403NP_569898.1 DinG 15..841 CDD:224120 179/873 (21%)
DEXDc2 16..394 CDD:214693 70/397 (18%)
Helicase_C_2 659..836 CDD:290046 59/178 (33%)
xpd-1NP_001348650.1 rad3 7..702 CDD:273169 180/874 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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