DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3690 and SV2A

DIOPT Version :9

Sequence 1:NP_001284764.1 Gene:CG3690 / 31047 FlyBaseID:FBgn0040350 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001315603.1 Gene:SV2A / 9900 HGNCID:20566 Length:742 Species:Homo sapiens


Alignment Length:633 Identity:146/633 - (23%)
Similarity:250/633 - (39%) Gaps:117/633 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PSESGDPKPHKTAEHQIGDPPQKEAAADFEAAIDAAGFGMFNILLLVAAVPAAMGTVYETSTMSY 68
            |...|:.:..|..|         |.|..:||.:...|.|.|...|......|.|....|...:.:
Human   133 PGGRGEAQRRKERE---------ELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGF 188

  Fly    69 ILPSAECDLKLSLLDKGILNAITYAGMISSAVLWGYLADIKGRRNLLIVGYAADTICVLGGALSQ 133
            :|||||.|:.||..:||:|..|.|.||:..|.|||.|||..|||..|::..:.:::.....:..|
Human   189 VLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQ 253

  Fly   134 SRIQLMVFKYLGGFCMSGPFAVLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPE- 197
            .....:..:.|.|..:.|...::.:|.:|...::.|...:..:.:.:.|..:....:|..|:|. 
Human   254 GYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHY 318

  Fly   198 TWNIQIWT-LSLTSWQFFVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREALDAFKFMYHLNSR 261
            .|:.|:.: ....||:.||.|.|.||:.:.......||||:|.:..|::.||....|.::..|.|
Human   319 GWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMR 383

  Fly   262 ---KPKDSFPIKLLANEVIVPVKKHAKDETIPTELKLPTECVEVQDPENQDSKKSSLRS------ 317
               .|:..|.:            .|.|  ||..|    .|.:|:|.......::..:|:      
Human   384 AKGHPERVFSV------------THIK--TIHQE----DELIEIQSDTGTWYQRWGVRALSLGGQ 430

  Fly   318 GFTQLRPLFTKPYLGLSLWVYLLNFCVLLGQNTMRLWLPQLFASINEYE-----NLMSGESQSTS 377
            .:......|...|..::|.:..:.|.:......:.:|.|.:...:...:     .:..||.....
Human   431 VWGNFLSCFGPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYASRTKVFPGERVEHV 495

  Fly   378 ICNI-LEYSVNRTQS---------QLEAVTRNDPTVE----------------CHVIIT------ 410
            ..|. ||..::|...         :|::|:..|...|                |..|.|      
Human   496 TFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTD 560

  Fly   411 ------------PSTYTNN-----LIVAGAGFVAYMLAGFLVNLVGVKLIMTSGLLIA------- 451
                        .||:.:|     |.|.|.|..|||:  :.|:.:|...::...::.|       
Human   561 LFEYKFVNSRLINSTFLHNKEGCPLDVTGTGEGAYMV--YFVSFLGTLAVLPGNIVSALLMDKIG 623

  Fly   452 -----AGCSI-------GMYWSSSAASTVALASLF--VTMGSISATSVISASVSLFPTSLRTMIV 502
                 ||.|:       .:.:.:|.::.:||..||  |::.|.:|..|:  :|.|:|:..||...
Human   624 RLRMLAGSSVMSCVSCFFLSFGNSESAMIALLCLFGGVSIASWNALDVL--TVELYPSDKRTTAF 686

  Fly   503 SLEMMFGRLGSLLGNIFFPALMGLGCVPPFLMISAFMLAGCFMAAFLP 550
            .......:|.::||...|.:.:|:....|.|..||.:..|..:|..||
Human   687 GFLNALCKLAAVLGISIFTSFVGITKAAPILFASAALALGSSLALKLP 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3690NP_001284764.1 SP 42..549 CDD:273317 135/592 (23%)
MFS 49..>195 CDD:119392 38/145 (26%)
MFS 419..>550 CDD:119392 37/151 (25%)
SV2ANP_001315603.1 synapt_SV2 1..742 CDD:130366 146/633 (23%)
Interaction with SYT1. /evidence=ECO:0000250 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..144 2/10 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D724235at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8480
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.