DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3690 and Sv2a

DIOPT Version :9

Sequence 1:NP_001284764.1 Gene:CG3690 / 31047 FlyBaseID:FBgn0040350 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_071313.1 Gene:Sv2a / 64051 MGIID:1927139 Length:742 Species:Mus musculus


Alignment Length:633 Identity:144/633 - (22%)
Similarity:250/633 - (39%) Gaps:117/633 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PSESGDPKPHKTAEHQIGDPPQKEAAADFEAAIDAAGFGMFNILLLVAAVPAAMGTVYETSTMSY 68
            |...|:.:..|..|         |.|..:|..:...|.|.|...|......|.|....|...:.:
Mouse   133 PGGRGEAQRRKDRE---------ELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGF 188

  Fly    69 ILPSAECDLKLSLLDKGILNAITYAGMISSAVLWGYLADIKGRRNLLIVGYAADTICVLGGALSQ 133
            :|||||.|:.||..:||:|..|.|.||:..|.|||.|||..|||..|::..:.:::.....:..|
Mouse   189 VLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQ 253

  Fly   134 SRIQLMVFKYLGGFCMSGPFAVLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPE- 197
            .....:..:.|.|..:.|...::.:|.:|...::.|...:..:.:.:.|..:....:|..|:|. 
Mouse   254 GYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHY 318

  Fly   198 TWNIQIWT-LSLTSWQFFVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREALDAFKFMYHLNSR 261
            .|:.|:.: ....||:.||.|.|.||:.:.......||||:|.:..|::.||....|.::..|.|
Mouse   319 GWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMR 383

  Fly   262 ---KPKDSFPIKLLANEVIVPVKKHAKDETIPTELKLPTECVEVQDPENQDSKKSSLRS------ 317
               .|:..|.:            .|.|  ||..|    .|.:|:|.......::..:|:      
Mouse   384 AKGHPERVFSV------------THIK--TIHQE----DELIEIQSDTGTWYQRWGVRALSLGGQ 430

  Fly   318 GFTQLRPLFTKPYLGLSLWVYLLNFCVLLGQNTMRLWLPQLFASINEYE-----NLMSGESQSTS 377
            .:......|:..|..::|.:..:.|.:......:.:|.|.:...:...:     .:..||.....
Mouse   431 VWGNFLSCFSPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEHV 495

  Fly   378 ICNI-LEYSVNRTQS---------QLEAVTRNDPTVE----------------CHVI-------- 408
            ..|. ||..::|...         :|::|:..|...|                |..|        
Mouse   496 TFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTD 560

  Fly   409 ----------ITPSTYTNN-----LIVAGAGFVAYMLAGFLVNLVGVKLIMTSGLLIA------- 451
                      :..||:.:|     |.|.|.|..|||:  :.|:.:|...::...::.|       
Mouse   561 LFEYKFVNSRLVNSTFLHNKEGCPLDVTGTGEGAYMV--YFVSFLGTLAVLPGNIVSALLMDKIG 623

  Fly   452 -----AGCSI-------GMYWSSSAASTVALASLF--VTMGSISATSVISASVSLFPTSLRTMIV 502
                 ||.|:       .:.:.:|.::.:||..||  |::.|.:|..|:  :|.|:|:..||...
Mouse   624 RLRMLAGSSVLSCVSCFFLSFGNSESAMIALLCLFGGVSIASWNALDVL--TVELYPSDKRTTAF 686

  Fly   503 SLEMMFGRLGSLLGNIFFPALMGLGCVPPFLMISAFMLAGCFMAAFLP 550
            .......:|.::||...|.:.:|:....|.|..||.:..|..:|..||
Mouse   687 GFLNALCKLAAVLGISIFTSFVGITKAAPILFASAALALGSSLALKLP 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3690NP_001284764.1 SP 42..549 CDD:273317 134/592 (23%)
MFS 49..>195 CDD:119392 38/145 (26%)
MFS 419..>550 CDD:119392 37/151 (25%)
Sv2aNP_071313.1 synapt_SV2 1..742 CDD:130366 144/633 (23%)
Interaction with SYT1. /evidence=ECO:0000250 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..145 3/11 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8715
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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