DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3690 and Sv2a

DIOPT Version :10

Sequence 1:NP_569876.3 Gene:CG3690 / 31047 FlyBaseID:FBgn0040350 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_476558.2 Gene:Sv2a / 117559 RGDID:619715 Length:742 Species:Rattus norvegicus


Alignment Length:633 Identity:144/633 - (22%)
Similarity:250/633 - (39%) Gaps:117/633 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PSESGDPKPHKTAEHQIGDPPQKEAAADFEAAIDAAGFGMFNILLLVAAVPAAMGTVYETSTMSY 68
            |...|:.:..|..|         |.|..:|..:...|.|.|...|......|.|....|...:.:
  Rat   133 PGGRGEAQRRKDRE---------ELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGF 188

  Fly    69 ILPSAECDLKLSLLDKGILNAITYAGMISSAVLWGYLADIKGRRNLLIVGYAADTICVLGGALSQ 133
            :|||||.|:.||..:||:|..|.|.||:..|.|||.|||..|||..|::..:.:::.....:..|
  Rat   189 VLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQ 253

  Fly   134 SRIQLMVFKYLGGFCMSGPFAVLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPE- 197
            .....:..:.|.|..:.|...::.:|.:|...::.|...:..:.:.:.|..:....:|..|:|. 
  Rat   254 GYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHY 318

  Fly   198 TWNIQIWT-LSLTSWQFFVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREALDAFKFMYHLNSR 261
            .|:.|:.: ....||:.||.|.|.||:.:.......||||:|.:..|::.||....|.::..|.|
  Rat   319 GWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMR 383

  Fly   262 ---KPKDSFPIKLLANEVIVPVKKHAKDETIPTELKLPTECVEVQDPENQDSKKSSLRS------ 317
               .|:..|.:            .|.|  ||..|    .|.:|:|.......::..:|:      
  Rat   384 AKGHPERVFSV------------THIK--TIHQE----DELIEIQSDTGTWYQRWGVRALSLGGQ 430

  Fly   318 GFTQLRPLFTKPYLGLSLWVYLLNFCVLLGQNTMRLWLPQLFASINEYE-----NLMSGESQSTS 377
            .:......|:..|..::|.:..:.|.:......:.:|.|.:...:...:     .:..||.....
  Rat   431 VWGNFLSCFSPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEHV 495

  Fly   378 ICNI-LEYSVNRTQS---------QLEAVTRNDPTVE----------------CHVI-------- 408
            ..|. ||..::|...         :|::|:..|...|                |..|        
  Rat   496 TFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTD 560

  Fly   409 ----------ITPSTYTNN-----LIVAGAGFVAYMLAGFLVNLVGVKLIMTSGLLIA------- 451
                      :..||:.:|     |.|.|.|..|||:  :.|:.:|...::...::.|       
  Rat   561 LFEYKFVNSRLVNSTFLHNKEGCPLDVTGTGEGAYMV--YFVSFLGTLAVLPGNIVSALLMDKIG 623

  Fly   452 -----AGCSI-------GMYWSSSAASTVALASLF--VTMGSISATSVISASVSLFPTSLRTMIV 502
                 ||.|:       .:.:.:|.::.:||..||  |::.|.:|..|:  :|.|:|:..||...
  Rat   624 RLRMLAGSSVLSCVSCFFLSFGNSESAMIALLCLFGGVSIASWNALDVL--TVELYPSDKRTTAF 686

  Fly   503 SLEMMFGRLGSLLGNIFFPALMGLGCVPPFLMISAFMLAGCFMAAFLP 550
            .......:|.::||...|.:.:|:....|.|..||.:..|..:|..||
  Rat   687 GFLNALCKLAAVLGISIFTSFVGITKAAPILFASAALALGSSLALKLP 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3690NP_569876.3 synapt_SV2 25..550 CDD:130366 138/610 (23%)
Sv2aNP_476558.2 synapt_SV2 1..742 CDD:130366 144/633 (23%)
Interaction with SYT1 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..145 3/11 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.