DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3690 and sv2c

DIOPT Version :9

Sequence 1:NP_001284764.1 Gene:CG3690 / 31047 FlyBaseID:FBgn0040350 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_002934873.1 Gene:sv2c / 100490137 XenbaseID:XB-GENE-960877 Length:725 Species:Xenopus tropicalis


Alignment Length:638 Identity:148/638 - (23%)
Similarity:243/638 - (38%) Gaps:161/638 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QKEAAADFEAAIDAAGFGMFNILLLVAAVPAAMGTVYETSTMSYILPSAECDLKLSLLDKGILNA 89
            ::|.|..:|..|...|.|.|...|......|.|....|...:.::|||||.|:.:.....|.|.:
 Frog   129 EEELAQQYELIIQECGHGRFQWTLFFVLGMALMADGVEVFVVGFVLPSAETDMCIPDSGSGWLGS 193

  Fly    90 ITYAGMISSAVLWGYLADIKGRRNLLIVGYAADTICVLGGALSQSRIQLMVFKYLGGFCMSGPFA 154
            |.|.||:..|..||.|||..||:..|::..:.:.......:..|.....:|.:.|.||.:.|...
 Frog   194 IVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGLFLVCRLLSGFGIGGALP 258

  Fly   155 VLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPETWNIQIWTLSL------TSWQF 213
            ...:|.:|:..|:.|...:..:.:.:.|..:....:|..|:|...    |:.|:      .||:.
 Frog   259 TAFSYFSEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYG----WSFSMGSAYQFHSWRV 319

  Fly   214 FVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREALDAFKFMYHLNSR---KPKDSFPIKLLANE 275
            ||.|.|||.:.:.|...|.||||:||:..|::.||....|.::..|.|   :|:..|.::     
 Frog   320 FVIVCALPCVSAVVALTFMPESPRFLLETGKHDEAWMILKQIHDTNMRARGEPEKVFTVQ----- 379

  Fly   276 VIVPVKKHAKDETIPTELKLP---TECVEVQDPENQDSKKSSLRSGFTQLRPLFTKPYLGLSLWV 337
                            .:|.|   .|.:|::.......|:.     |.::|..|      ..:|:
 Frog   380 ----------------RIKTPKQIDELIEIESDTGTWYKRC-----FVRIRTEF------YGIWL 417

  Fly   338 -YLLNFCVLLGQNTMRL---WLPQLFA---------------SINEYENLMSGESQSTSICNILE 383
             ::..|...:..||::|   ||...|.               ..:||.:.:...:.||    |.:
 Frog   418 TFMRCFEYPVKDNTIKLTIVWLTLSFGYYGLSVWFSDVIKHLQADEYASRVKRFNGST----IAD 478

  Fly   384 YSVNRT---QSQLEAVTRNDPTV---------------ECHV--IITPSTYTNNLIVAGAGFV-- 426
            |..|.|   |....||..||..:               .|:.  :.:.:||..|..:....||  
 Frog   479 YKFNYTLENQIHKNAVFINDRFISMKFKSVVFQDSLFERCYFEDVTSINTYFRNCTLIDTHFVNT 543

  Fly   427 ---------------------------------AYMLAGFLVNLVGV------------------ 440
                                             ||.:  :.||.:|.                  
 Frog   544 DLEKYKFTDSQTINCTFTIPKIGCQITFDDDYSAYWI--YFVNFLGTLAVLPGNIVSALLMDKIG 606

  Fly   441 KLIMTSGLLIAAGCSIGMYWSSSAASTVALASLFVTMG-SISA-TSVISASVSLFPTSLRTMIVS 503
            :|.|..|.::.:|.|..:.|..::.| :.:..|.|..| :||| .|:...:|.|:||..|.    
 Frog   607 RLTMLGGSMVLSGISCFLLWFGTSES-MMVGMLCVYNGLTISAWNSLDVVTVELYPTDKRA---- 666

  Fly   504 LEMMFGRLGSL------LGNIFFPALMGLGCVPPFLMISAFMLAGCFMAAFLP 550
              ..||.|.:|      |||:.|.:|:|:....|.|:.||.::.|..:...||
 Frog   667 --TGFGFLNALCKGAAVLGNLIFGSLVGITKAIPILLASAVLVGGGLVGLRLP 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3690NP_001284764.1 SP 42..549 CDD:273317 141/618 (23%)
MFS 49..>195 CDD:119392 36/145 (25%)
MFS 419..>550 CDD:119392 41/191 (21%)
sv2cXP_002934873.1 synapt_SV2 1..725 CDD:130366 148/638 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D724235at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9375
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.