DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3690 and sv2a

DIOPT Version :9

Sequence 1:NP_001284764.1 Gene:CG3690 / 31047 FlyBaseID:FBgn0040350 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_012825002.1 Gene:sv2a / 100379721 XenbaseID:XB-GENE-968429 Length:729 Species:Xenopus tropicalis


Alignment Length:615 Identity:138/615 - (22%)
Similarity:249/615 - (40%) Gaps:114/615 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QKEAAADFEAAIDAAGFGMFNILLLVAAVPAAMGTVYETSTMSYILPSAECDLKLSLLDKGILNA 89
            ::|.|..:|..:...|.|.|...|......|.|....|...:.::|||||.|:.||..:||:|..
 Frog   132 KEELAQQYEVILQECGHGRFQWTLYFVLGLALMADGVEIFVVGFVLPSAEKDMCLSDSNKGMLGL 196

  Fly    90 ITYAGMISSAVLWGYLADIKGRRNLLIVGYAADTICVLGGALSQSRIQLMVFKYLGGFCMSGPFA 154
            |.|.||:..|.|||.:||..|||..|::..:.:::.....:..|.....:..:.|.|..:.|...
 Frog   197 IVYLGMMVGAFLWGGMADRIGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIP 261

  Fly   155 VLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPE-TWNIQIWT-LSLTSWQFFVAV 217
            ::.:|.:|...::.|...:..:.:.:.|..:....:|..|:|. .|:.|:.: ....||:.||.|
 Frog   262 IVFSYFSEFLAQEKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLV 326

  Fly   218 TALPSLLSFVLFFFFPESPKFLMSKGRNREALDAFKFMYHLNSRKPKDSFPIKLLANEVIVPVKK 282
            .|.||:.:.......||||:|.:..|::.||....|.::..|.|  ....|.::.:   :..:|.
 Frog   327 CAFPSVFAIGALTTMPESPRFFLENGKHDEAWMVLKQVHDTNMR--AKGHPERVFS---VTQIKT 386

  Fly   283 HAKDETIPTELKLPTECVEVQDPENQDSKKSSLR---------SGFTQLRPLFTKPYLGLSLWVY 338
            ..:|:          |.||:|.......::..::         :.|.|   .|...|..::|.:.
 Frog   387 IKQDD----------ELVEIQSDTGALHRRWMIKLLNLSQEVWANFHQ---CFAPEYRRITLMMM 438

  Fly   339 LLNFCVLLGQNTMRLWLPQL--------FASINEYENLMSGESQSTSICNI-LEYSVNR------ 388
            .:.|.:......:.:|.|.:        :||..:|   ...||.:....|. ||..|:|      
 Frog   439 AVWFTMSFSYYGLTVWFPDMIKHLQNIDYASRTKY---FHNESVNNFNFNFTLENQVHRKGEYHN 500

  Fly   389 ------------------TQSQLEAVTRNDPTVE-CHVIIT-------------PSTYTNNLIVA 421
                              |....|.:|.::...: |..|.|             .|.:||:..:.
 Frog   501 DKFIGLKLKSVIFEDSLFTDCYFEDITSSNTFFKNCSFIRTMFYNTDLFDYKFINSKFTNSTFLH 565

  Fly   422 GAGFV----------AYMLAGFLVNLVGVKLIMTSGLLIA------------AGCSI-------G 457
            .....          |||:  :.|:.:|...::...::.|            ||.|:       .
 Frog   566 SKEGCQLDFSDDINNAYMI--YFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCISCFF 628

  Fly   458 MYWSSSAASTVALASLF--VTMGSISATSVISASVSLFPTSLRTMIVSLEMMFGRLGSLLGNIFF 520
            :::.:|.::.:||..||  |::.|.:|..|:  :|.|:|:..||..........:|.::||...|
 Frog   629 LFFGNSESAMIALLCLFGGVSIASWNALDVL--TVELYPSDKRTTAFGFLNALCKLAAVLGISIF 691

  Fly   521 PALMGLGCVPPFLMISAFMLAGCFMAAFLP 550
            .:.:|:....|.|:.||.:..|.|:|..||
 Frog   692 TSFVGVAKAVPILLASAALAVGSFLALKLP 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3690NP_001284764.1 SP 42..549 CDD:273317 132/595 (22%)
MFS 49..>195 CDD:119392 37/145 (26%)
MFS 419..>550 CDD:119392 35/161 (22%)
sv2aXP_012825002.1 synapt_SV2 1..729 CDD:130366 138/615 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D724235at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9375
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.