DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3699 and stdh-4

DIOPT Version :9

Sequence 1:NP_569875.2 Gene:CG3699 / 31046 FlyBaseID:FBgn0040349 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001355440.1 Gene:stdh-4 / 184934 WormBaseID:WBGene00006435 Length:317 Species:Caenorhabditis elegans


Alignment Length:197 Identity:59/197 - (29%)
Similarity:96/197 - (48%) Gaps:21/197 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVTGASSGIGAAIAQVLAREGATLALVGRNVANLEATKKSLKGTQAEI----VVADVTKDADAIV 69
            :||||:.|||.:.|..|||.|..:.|:.|..:.|..|||.:....::|    .:.|.|:.:....
 Worm    57 VVTGATDGIGRSYALDLARRGFNIFLISRTKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDY 121

  Fly    70 QQTLAKFGRID--VLVNNAGIL---------GKGGLIDLDIEEFDAVLNTNLRGVILLTKAVLPH 123
            ::.|.....:|  :|:||.|:.         .:||     |:....|:|.|:..|.|||..:||.
 Worm   122 KRLLHSLNEVDIGILINNVGMCFDNPEVLHRVEGG-----IDTLTNVINVNILPVTLLTAGILPQ 181

  Fly   124 LLKTK-GAVVNVSSCAGIRPFAGALSYGVSKAALDQFTKIVALEMAPQGVRVNSVNPGFVVTNIH 187
            ::..| |.:||:.|.||....|....|..:|..::.||.|:..|...:|:...::.|..|.||:.
 Worm   182 MMARKSGIIVNIGSAAGSIHMAKWSVYSATKKYIEWFTSILQKEYENEGIICQTITPLLVSTNMI 246

  Fly   188 RN 189
            :|
 Worm   247 KN 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3699NP_569875.2 fabG 1..244 CDD:235546 59/197 (30%)
NADB_Rossmann 3..248 CDD:304358 59/197 (30%)
stdh-4NP_001355440.1 17beta-HSD1_like_SDR_c 53..295 CDD:187614 59/197 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D913128at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.