DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3703 and sgsm3

DIOPT Version :9

Sequence 1:NP_569874.1 Gene:CG3703 / 31045 FlyBaseID:FBgn0040348 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_998495.1 Gene:sgsm3 / 406635 ZFINID:ZDB-GENE-040426-2635 Length:755 Species:Danio rerio


Alignment Length:584 Identity:116/584 - (19%)
Similarity:206/584 - (35%) Gaps:163/584 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 DSQLIQQLKSQ-LTELEQIAYEAG-EPGILPQHVLLEKQKFILDELRAKLNLQVEQHELPALSTE 233
            |.::::||..| |..|:::..|.. |..::..|..|.....::| :|..|.:    .:|......
Zfish   248 DQRVLRQLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVD-IRILLRI----WDLLFYEGS 307

  Fly   234 QLRHQVDNAIGEFVGPLKMKE-QLV-----AQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSG 292
            .:..||.      :|.||:|| :||     |.:...::||..     |.:.....:|:.::|...
Zfish   308 MVLFQVT------LGMLKIKEDELVSSENSASIFNTLSDLPS-----QLEDGAAVLGEAVRLAGS 361

  Fly   293 AYNSYAAKQTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASVLMQMFAS 357
            .  |.....|.|....:|:...          .:.|.:::|        |.|            :
Zfish   362 L--SQENLDTHRHKHLAYILAE----------QAQLNSNNS--------HSL------------N 394

  Fly   358 THLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAALAATLSCDREKLANIKRALRKQQ 422
            |:|.|.......::   |.|.....||:         .||.||.|......|.:|.::.|:.:..
Zfish   395 TNLNKVVRRQNMRR---KSTLSSLLWGE---------DEVEALKAKNIKQTELVAALREAINRTA 447

  Fly   423 QQAE-------STEFS----------DTGNPVINSQNGALTLPPRCRRAVP-------TGHELAP 463
            :...       ||:.:          |..|.::.|:|       |.|||..       ...||. 
Zfish   448 EHFHCLDPRNCSTDLTPDYSMESHQRDHENFLVVSRN-------RRRRAKALLDFERHDDDELG- 504

  Fly   464 YASGGAIS--SDSDEDISYSNFEWEKE-----------------SKSRRTTHARGDSIATIGREL 509
            :.....|:  |..||..      |..|                 .:|:..:.|..|   |:...:
Zfish   505 FRKNDIITIISQKDEHC------WVGELNGLRGWFPAKFVEILDERSKEYSLAGDD---TVTEAV 560

  Fly   510 TTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHPGPPVVPPAVGGDSQFLGLGRAMHA 574
            ..:||.:....|:.:.||||:.|:.                                 ||...|.
Zfish   561 NDLVRGSLCPALKAIFQHGLKKPSI---------------------------------LGGPCHP 592

  Fly   575 WELVLAYYRLKHGEEYNNTPAR-KLSQSFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNA 638
            |..:......:...::|:..:| .|.::::|| .|.:.:|.::.|..||..:...|.......:.
Zfish   593 WLFIEEAASKEVERDFNSVYSRLVLCKTYRLD-EDGKVLTPEELLYRAVQSVNMSHDTAHVQMDV 656

  Fly   639 HFKAFVCAGLNSHLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLPVD 702
            .|::.:|.|||..:|..||.::.|....|:.:|...|::...|:......:..||:|.|.|..|
Zfish   657 KFRSLICVGLNEQVLHLWLEVLCSSMSAVEKWYHPWSFLRSPGWVQIKCELRVLSKFAFSLSQD 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3703NP_569874.1 RUN 516..703 CDD:280855 40/188 (21%)
sgsm3NP_998495.1 TBC 112..326 CDD:214540 21/88 (24%)
SH3_SGSM3 488..540 CDD:212747 10/58 (17%)
RUN 567..720 CDD:280855 39/186 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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