DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3703 and rundc1

DIOPT Version :9

Sequence 1:NP_569874.1 Gene:CG3703 / 31045 FlyBaseID:FBgn0040348 Length:711 Species:Drosophila melanogaster
Sequence 2:XP_004918697.2 Gene:rundc1 / 100493791 XenbaseID:XB-GENE-6047341 Length:574 Species:Xenopus tropicalis


Alignment Length:685 Identity:226/685 - (32%)
Similarity:319/685 - (46%) Gaps:152/685 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 ERWSPLGANYDDANSASS--GVDCELEPGLEKS--EARRGSTGSELA-RLRSIEEEQELLTSSLL 107
            |||:|:||..:|.:...|  ......:.||..|  ..|.||...||. :||.:||||:||.||||
 Frog    17 ERWAPVGAVAEDTDEQGSKRRFSSNADEGLSGSPVRVRSGSVSGELVEKLRKLEEEQDLLNSSLL 81

  Fly   108 ALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAVQSKESH----PDKPASDGEKDH 168
            |||||||.||.|::|||.|...|::.||.:||||||:|.|..:.:::..    .|...|:.||..
 Frog    82 ALTSHFAQVQFRLKQIVRAEGGEKETLLAELEDFAFKGSPHVLGTRKLEEQVLDDSKLSEWEKRE 146

  Fly   169 GPDSQ------LIQQLKSQLTELEQIAYEAGEPGILPQHVLLEKQKFILDELRAKLNLQVEQHEL 227
            ..::|      ||.|||:||.:||..||:.|....|||.:::|||:.|:|||..||::...: ::
 Frog   147 RIEAQRQKQRELIVQLKTQLDDLETFAYQEGSYDSLPQSMVMEKQRVIIDELIKKLDVNFHE-DI 210

  Fly   228 PALSTEQLRHQVDNAIGEFVGPLKMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSG 292
            ..||.|:||.:||.||.:.|.|.::|||||.||||||.|||.||.|:|.:.  ||..|       
 Frog   211 TCLSPEELRQRVDAAIAQIVNPARVKEQLVEQLKTQIRDLEMFIQFIQDEV--GSPVD------- 266

  Fly   293 AYNSYAAKQTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASVLMQMFA- 356
                           .|...|...:....|.|.:.:....:.:...::.| ||.:|..::|||| 
 Frog   267 ---------------CSASGTEGYSPNTKTNPRNKMTPEQARQMRQTRLH-LLRRALAVLQMFAV 315

  Fly   357 -----STHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAALAATLSCDREKLANIKR 416
                 .|..|        ..|..|:......:..|..:||..:::|..||               
 Frog   316 SQFGCGTGAV--------PANLWKQDESNRDFSPLIKKLEESVEKVRQLA--------------- 357

  Fly   417 ALRKQQQQAESTEFSDTGNPVINSQNGALTLPPRCRRAVPTGHELAPYASGGAISSDSDEDISYS 481
                  |:.::.|.                                      .||..|.:::|..
 Frog   358 ------QRNQTYEH--------------------------------------VISYSSTKELSMG 378

  Fly   482 NFEWEKESKSRRTTHARGDSIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMR 546
            ..:                       |||..|||..|..::.|:.|||.  |.|...||::..:.
 Frog   379 GKD-----------------------ELTMAVRKELAVAIRDLLSHGLY--ATSQGMSLVLAPIA 418

  Fly   547 CLHPGPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQSFQLDIVDAQA 611
            ||.|.....||             .||.|||.:.||..::|:.:..:|||||||||.|.:.....
 Frog   419 CLIPVFSTSPP-------------TMHPWELFVKYYNEQNGKAFVESPARKLSQSFSLPVSGNSK 470

  Fly   612 VTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNSHLLVEWLNLILSCHELVDTYYSADSY 676
            ||.|||||:|:..:|..|.|:||..::.|||.:|..||...||.||||:.....|:.|:|...||
 Frog   471 VTPKQSLLTAIHTVLTEHDPFKRGADSEFKALICMALNEQRLVSWLNLLCKSGVLIQTHYQPWSY 535

  Fly   677 VARTGFRDSLRSIDALSRFDFDLPVDLAIRHFRNI 711
            :|.:||..:|..:..||...|.||||||:|..:||
 Frog   536 MASSGFESALNILSRLSTLKFSLPVDLAVRQLKNI 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3703NP_569874.1 RUN 516..703 CDD:280855 72/186 (39%)
rundc1XP_004918697.2 COG1340 <61..260 CDD:224259 97/199 (49%)
RUN 390..560 CDD:397055 70/184 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 182 1.000 Domainoid score I3404
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H15095
Inparanoid 1 1.050 333 1.000 Inparanoid score I2380
OMA 1 1.010 - - QHG45254
OrthoDB 1 1.010 - - D255049at33208
OrthoFinder 1 1.000 - - FOG0007086
OrthoInspector 1 1.000 - - oto103574
Panther 1 1.100 - - LDO PTHR22957
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3919
SonicParanoid 1 1.000 - - X5173
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

Return to query results.
Submit another query.