DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRAM and tram1

DIOPT Version :9

Sequence 1:NP_001245456.1 Gene:TRAM / 31042 FlyBaseID:FBgn0040340 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_001001210.1 Gene:tram1 / 407868 XenbaseID:XB-GENE-944943 Length:373 Species:Xenopus tropicalis


Alignment Length:387 Identity:154/387 - (39%)
Similarity:218/387 - (56%) Gaps:46/387 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAAFASAFISLHHNVS-------GED 66
            ||.::|.||:|||||:|||||||:||:||||::|||.|.||..|..|::|.:||:       ||.
 Frog     4 RKKNSKTPPVLSHEFIIQNHADIVSCLAMVFLLGLMFEITAKMAVMFVTLQYNVTIPVEGVLGEP 68

  Fly    67 PSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMHAIIQEFVLDKISKKLHLSKFKLARFNESGQL 131
            .|         .|..||||...:|||.|..||:||:|||::||||::::|.||.|.::|||||||
 Frog    69 AS---------LYHYGIKDMATVFFYMLVAIILHAVIQEYILDKINRRMHFSKTKHSKFNESGQL 124

  Fly   132 VAFYLLSFVWGAHVLLKEGYLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKT 196
            .||||.|.:|||.:::.|.|......||:|:|.....|..||:::.||||:.|..||||||  ||
 Frog   125 SAFYLFSCIWGASIIVSENYFSDPISLWKGYPHTYFPFQMKFFYISQLAYWFHAFPELYFQ--KT 187

  Fly   197 KEEQQPKIVHSISGFTL-IVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFDREERLAKLRV 260
            |:|..|:.:..|..:.. |:.||.|:..||.||||.||||.|.|.|:.:|.  :...|:..|...
 Frog   188 KKEDIPRQLVYIGLYLFHIIGAYVLNLNRLGLVLLVLHYFVEFLFHMSRLF--YFSNEKYQKGFT 250

  Fly   261 VNNAVFFLIRFATSVIGVLTLYYGI-----------GGVRSLLA-----LGGLIALQGYLVFSFI 309
            :...:|.|.|..|.::.|||:.:|:           .|..::||     |..:...|.::::.||
 Frog   251 LWAVLFVLGRLLTLILSVLTVGFGLARAENQELDLSNGNFNILAIRISVLASICITQAFMMWKFI 315

  Fly   310 TEQLRAKREAKKEAKREAKLALQTKKPAKTPKDKVKRKKESDLPEADQTS---PSPIKQKLK 368
            ..|||..||      ..:......:|.|.:.|.|..||::.:......||   .||..:|.|
 Frog   316 NFQLRRWRE------HSSPQPSSQRKKATSAKGKASRKEKENGVNGTVTSNGADSPRSRKEK 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAMNP_001245456.1 TRAM1 52..121 CDD:285576 31/75 (41%)
TLC 124..290 CDD:214789 70/177 (40%)
tram1NP_001001210.1 TRAM1 47..114 CDD:312036 31/75 (41%)
TLC 116..325 CDD:214789 81/218 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5581
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I3133
OMA 1 1.010 - - QHG49031
OrthoDB 1 1.010 - - D496777at33208
OrthoFinder 1 1.000 - - FOG0002124
OrthoInspector 1 1.000 - - otm49197
Panther 1 1.100 - - O PTHR12371
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4393
SonicParanoid 1 1.000 - - X1077
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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