DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRAM and tram1

DIOPT Version :10

Sequence 1:NP_726710.1 Gene:TRAM / 31042 FlyBaseID:FBgn0040340 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_705955.2 Gene:tram1 / 266757 ZFINID:ZDB-GENE-021011-1 Length:369 Species:Danio rerio


Alignment Length:378 Identity:163/378 - (43%)
Similarity:219/378 - (57%) Gaps:34/378 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKTSNKNPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAAFASAFISLHHNVSGEDPSREQPY 73
            ||.:.||||:|||||||||||||:|||||||::|||.|.|:..|..||::.:||:  .|:...|.
Zfish     4 RKKTTKNPPVLSHEFVIQNHADIVSCVAMVFLLGLMFEITSKVAVLFITVQYNVT--IPANGGPE 66

  Fly    74 GKPYTYI-AGIKDYCAIFFYTLTCIIMHAIIQEFVLDKISKKLHLSKFKLARFNESGQLVAFYLL 137
            .....|. .|:||...||||.|..|||||||||:|||||::|:|.||.|.::|||||||.||||.
Zfish    67 EATVNYFHYGLKDVATIFFYMLVAIIMHAIIQEYVLDKINRKMHFSKTKHSKFNESGQLSAFYLF 131

  Fly   138 SFVWGAHVLLKEGYLGQVAQLWEGFPDHPMSFLHKFYFVVQLAYYLHMLPELYFQKIKTKEEQQP 202
            |.:|||.:|:.|..|.....||:|:|...|.|..|||::.||.|:||.:|||||||.| ||:...
Zfish   132 SCLWGASILVSENILSNPVSLWDGYPHTLMQFQMKFYYICQLGYWLHAIPELYFQKAK-KEDIPR 195

  Fly   203 KIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFDREERLAKLRVVNNAVFF 267
            ::|:.......|..||.|:..||.||||.||||.||:.||.:|| .|..|||.:...|.  ||.|
Zfish   196 QLVYISLYLVHIAGAYALNLNRLGLVLLVLHYFVELIFHVSRLI-YFSNEERQSGFTVW--AVLF 257

  Fly   268 LI-RFATSVIGVLTLYYGIGGVRS----------------LLALGGLIALQGYLVFSFITEQLRA 315
            :: |..|..:.|||:.:|:.|...                :..|..:...|.::::.||..|||.
Zfish   258 VLGRLLTLSLSVLTVGFGLAGAEKQGLNLAEGSFNVLFVRVTVLAAICITQAFMMWKFINFQLRR 322

  Fly   316 KREAKKEAKREAKLALQTKKPAKTPKDKVKRKK--ESDLPEADQTSPSPIKQK 366
            .||   :|:.:.     .||.:.:.|.|.|:..  ...:..:...||...|:|
Zfish   323 WRE---QAQTQT-----LKKKSSSSKSKSKKANGVNGSVGASGADSPRARKEK 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAMNP_726710.1 TRAM1 52..121 CDD:462460 34/69 (49%)
TLC 124..290 CDD:214789 78/166 (47%)
tram1NP_705955.2 TRAM1 50..115 CDD:462460 33/66 (50%)
TLC 117..326 CDD:214789 87/215 (40%)

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