DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRAM and tram-1

DIOPT Version :10

Sequence 1:NP_726710.1 Gene:TRAM / 31042 FlyBaseID:FBgn0040340 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_501868.1 Gene:tram-1 / 177902 WormBaseID:WBGene00007696 Length:373 Species:Caenorhabditis elegans


Alignment Length:377 Identity:136/377 - (36%)
Similarity:207/377 - (54%) Gaps:38/377 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IKPGLGRKTSNK-NPPILSHEFVIQNHADIISCVAMVFVVGLMNESTAAFASAFISLHHN----V 62
            :||..|.|.|.| .||||||||:||||.||:|||.|||:||||...|.:.:|.||:..:|    |
 Worm     2 VKPQGGSKASKKPQPPILSHEFIIQNHGDIMSCVVMVFIVGLMFPLTHSLSSLFIAPQYNGTYTV 66

  Fly    63 SGEDPSREQPYGKPYTYIAGIKDYCAIFFYTLTCIIMHAIIQEFVLDKISKKLHLSKFKLARFNE 127
            :.|.....:.:|    |::||.|..|||||::..|::||::||:.|||||||.||||....:|.|
 Worm    67 AVEQGQEREVHG----YLSGILDLPAIFFYSVCWIVVHAVVQEYGLDKISKKTHLSKVSTFKFGE 127

  Fly   128 SGQLVAFYLLSFVWGAHVL---LKEGYLGQVAQLWEGFP-DH-PMSFLHKFYFVVQLAYYLHMLP 187
            |...:.|.:.|.....:::   |::....:...:|.|:| :| .||..:|.||:.|::|::|..|
 Worm   128 SFHQMFFTVYSIAHAFYIVSERLEDFSEVKSFSVWLGYPTEHRVMSAAYKLYFIFQISYWIHQFP 192

  Fly   188 ELYFQKIKTKEEQQPKIVHSISGFTLIVLAYTLSFQRLALVLLTLHYFSELLSHVFQLIGVFDRE 252
            |.|.||:| ::|.:.|.|.:|.....|.:||..:|.|:.|.|:||.|.::|:.|:.:......|:
 Worm   193 EFYLQKLK-RDEIRQKSVQAILHIAFISIAYFFNFTRVGLALITLEYITQLIFHIARFAHFVGRK 256

  Fly   253 ERLAKLRVVNNAVFFLIRFATSVIGVLTLYYGIGGVRS----------------LLALGGLIALQ 301
            ........:.|..|.|:|..:.:|.|:|.:||:....|                |..|..::.||
 Worm   257 GLSDPAFKLFNGSFVLVRLGSIIIAVMTFWYGLRQAESPFVDISAGNFNTAVIRLNVLLAVVLLQ 321

  Fly   302 GYLVFSFITEQLRAKRE--AKKEAKREAKLALQTKKPAKTPKDKVKRKKESD 351
            .:|::||:...:...||  ||||.|:.|..|....|     |:|.::..|||
 Worm   322 LFLLYSFVVFHMGRFRESNAKKEKKKSAAAAAAVPK-----KEKKRQDSESD 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAMNP_726710.1 TRAM1 52..121 CDD:462460 32/72 (44%)
TLC 124..290 CDD:214789 50/170 (29%)
tram-1NP_501868.1 TRAM1 53..119 CDD:462460 30/69 (43%)
TLC 123..297 CDD:214789 51/174 (29%)

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