DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lztr1 and AT5G04420

DIOPT Version :10

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_196062.1 Gene:AT5G04420 / 830321 AraportID:AT5G04420 Length:514 Species:Arabidopsis thaliana


Alignment Length:298 Identity:77/298 - (25%)
Similarity:118/298 - (39%) Gaps:57/298 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 GDNGKNMLNDLIRFGVKDKSWGRACATGTPPAPRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTNK 333
            ||...|:.:|         .|.....:|:..:.||.|:|||....::|.||       :.|....
plant    11 GDWHSNLAHD---------EWTPLPVSGSRASARYKHAAVVVDEKLYIVGG-------SRNGRYL 59

  Fly   334 NDLFEYKFQSAMWVEWKF----------------SGRQPVPR-SAHGAAVYDNKMWIYAGYDGNA 381
            :|:..:..:|..|...|.                |.|:..|. |.|....:.||:.:..|:...:
plant    60 SDVQVFDLRSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKS 124

  Fly   382 ------RLNDMWTLNLTGENQWEEVDQLGDRPPTCCNFPVAVARDAMYVFSGQ-SGLQITNSLFE 439
                  |..|:.|      :....:|..|:.|.:.....:.:....:.||.|: ...::.|.|..
plant   125 SDNMLVRFIDLET------HSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHV 183

  Fly   440 FHFKTRTWRRISNEPVLRGATSAPPSRRYGHT-MVHHDRFLYVFGGSADSTLPNDLHCYDLDSQV 503
            .|.:|.||..:..:       ...|..|:.|| ..|.||:|.:|||.:.|...:|||..||.:..
plant   184 LHLETMTWDVVETK-------QTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTME 241

  Fly   504 WSVIQPEQNSDVPSGRVFHASAVICDAMYIFGGTVDNS 541
            ||  ||....||.:.|..||...|.:..||.||. |||
plant   242 WS--QPHVQGDVVTPRAGHAGITIDENWYIVGGG-DNS 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 NanM 252..551 CDD:442289 77/298 (26%)
KELCH repeat 252..298 CDD:276965 6/28 (21%)
KELCH repeat 302..355 CDD:276965 15/68 (22%)
KELCH repeat 359..407 CDD:276965 10/54 (19%)
KELCH repeat 410..455 CDD:276965 9/45 (20%)
KELCH repeat 467..509 CDD:276965 18/42 (43%)
BTB1_POZ_LZTR1 551..704 CDD:349617
BACK1_LZTR1 708..766 CDD:350580
BTB2_POZ_LZTR1 781..906 CDD:349618
BACK2_LZTR1 902..962 CDD:350581
AT5G04420NP_196062.1 NanM 21..278 CDD:442289 73/279 (26%)
KELCH repeat 35..128 CDD:276965 22/99 (22%)
KELCH repeat 153..201 CDD:276965 9/54 (17%)
KELCH repeat 204..243 CDD:276965 16/38 (42%)
KELCH repeat 255..294 CDD:276965 11/23 (48%)
COG4372 <399..>502 CDD:443500
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.