DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lztr1 and hcfc1b

DIOPT Version :10

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_001122009.1 Gene:hcfc1b / 565206 ZFINID:ZDB-GENE-030131-2411 Length:1993 Species:Danio rerio


Alignment Length:368 Identity:91/368 - (24%)
Similarity:146/368 - (39%) Gaps:78/368 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 QWTRMLECAEFVGAKRSKHTVVAYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRACATGTPPAP 301
            :|.|:|..:..|...|..|..||.|:.|.||||.| :.::::|..:......|......|..|..
Zfish    12 RWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGN-EGIVDELHVYNTATNQWFIPAVRGDIPPG 75

  Fly   302 RYHHSAVVAGSSMFIFGG------YTGDIHSNSNLTNKNDLFEYKFQSAMWVEWK-------FSG 353
            ...:..|..|:.:.:|||      |:.|:              |:.|::.| |||       .:|
Zfish    76 CAAYGFVCDGTRLLVFGGMVEYGKYSNDL--------------YELQASRW-EWKRLKPKAPKNG 125

  Fly   354 RQPVPRSAHGAAVYDNKMWIYAGYDGNAR---------LNDMWTLNL-TGEN--QWEEVDQLGDR 406
            ..|.||..|..::..||.:::.|...::.         |||::||.| .|.|  .|:.....|..
Zfish   126 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRPGSNVAGWDIPITYGVL 190

  Fly   407 PPTCCNFPVAV------ARDAMYVFSGQSGLQITNSLFEFHFKTRTWRRISNEPVLRGATSAPPS 465
            ||...:....|      .:..:.::.|.||.:: ..|:.....|.||    |:|.:.||...|.|
Zfish   191 PPPRESHTAVVYTEKTSKKSRLIIYGGMSGCRL-GDLWTLDIDTLTW----NKPAISGAAPLPRS 250

  Fly   466 RRYGHTMVHHDRFLYVFGG--------------SADSTLPNDLHCYDLDSQVWSVIQPEQNSD-V 515
            .....|:.:.   ::||||              ..:....|.|.|.:|||..|..|..:...| :
Zfish   251 LHSATTITNK---MFVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMSWETILMDTLEDNI 312

  Fly   516 PSGRVFHASAVICDAMYIFGGTVDNSVRRGDTYRFQFSSYPKC 558
            |..|..|.|..|.:.:|::.|.        |.||..:::...|
Zfish   313 PRARAGHCSVAINNRLYVWSGR--------DGYRKAWNNQVCC 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 NanM 252..551 CDD:442289 86/344 (25%)
KELCH repeat 252..298 CDD:276965 14/45 (31%)
KELCH repeat 302..355 CDD:276965 14/65 (22%)
KELCH repeat 359..407 CDD:276965 15/59 (25%)
KELCH repeat 410..455 CDD:276965 9/50 (18%)
KELCH repeat 467..509 CDD:276965 13/55 (24%)
BTB1_POZ_LZTR1 551..704 CDD:349617 1/8 (13%)
BACK1_LZTR1 708..766 CDD:350580
BTB2_POZ_LZTR1 781..906 CDD:349618
BACK2_LZTR1 902..962 CDD:350581
hcfc1bNP_001122009.1 NanM 19..338 CDD:442289 85/350 (24%)
KELCH repeat 27..74 CDD:276965 14/47 (30%)
KELCH repeat 78..128 CDD:276965 14/64 (22%)
KELCH repeat 194..247 CDD:276965 12/57 (21%)
KELCH repeat 249..313 CDD:276965 15/66 (23%)
Herpes_BLLF1 <340..774 CDD:282904 1/8 (13%)
PHA03247 <397..609 CDD:223021
Herpes_BLLF1 <1138..1484 CDD:282904
FN3 1851..1953 CDD:473895
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.