DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lztr1 and rabepk

DIOPT Version :9

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_001002209.1 Gene:rabepk / 431756 ZFINID:ZDB-GENE-040704-52 Length:351 Species:Danio rerio


Alignment Length:339 Identity:91/339 - (26%)
Similarity:142/339 - (41%) Gaps:60/339 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 PPGSSCSSGPG---GSGCSMAYDAASNASSGSGSGS----GKATSPGSYSCN-ALNVDFTSYTAT 235
            |.|::    ||   |..||....|..:...|.|.|.    |.|...||::.: .:|:|      |
Zfish    23 PTGAA----PGVSVGHTCSFLPAAHHHDEDGGGKGKIVIVGGANPSGSFADSYIINLD------T 77

  Fly   236 HQWTRMLECAEFVGAK-RSKH---TVVAYKDAMFVFGG---DNGKNMLNDLIRF---GVKDKSWG 290
            |||    :..::.|.: |.:|   |..:...:::||||   ...:|.:..| ||   |...:.|.
Zfish    78 HQW----DLPDWEGLQARYEHCSFTPESEPQSLWVFGGAEKSTNRNCVQAL-RFSDGGEGRRFWQ 137

  Fly   291 RACATGTPPAPR-YHHSAVVAGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFQSAMWVEWKFSGR 354
            ....||.||:.| ||.::...|:.:|:|.|  |:  :.|:......|..:...|..|.:...:|.
Zfish   138 SVQVTGVPPSGRTYHTNSACVGNRLFVFSG--GE--AGSSAVTDAQLHVFDAVSVTWTQPDTTGT 198

  Fly   355 QPVPRSAHGAAVYDNKMWIYAGYDGNARLNDMWTLNLTGENQWEEVDQLGDRPPTCCNFPVAVAR 419
            .|..|..|......:.::|:.|..|....:||:||| |...:|::|...||.||...........
Zfish   199 PPAQRHGHVITAVGSDIYIHGGMSGEKFHSDMFTLN-TESLKWQKVKAKGDLPPGVAAHSSVTFN 262

  Fly   420 DAMYVFSGQSGLQITNSLFEFHFKTRTWRRISNEPVLRGATSAPPSRRYGHTMV----------- 473
            ..:::|.|.:....|||:|:|....:.|..:..|..|      ||. |..|:|.           
Zfish   263 KNIFIFGGMTADGATNSMFKFQCDKQRWTLLKFEGDL------PPG-RLDHSMCLLPWRVKMEDS 320

  Fly   474 -HHD--RFLYVFGG 484
             |.|  ...:||||
Zfish   321 EHADVQHLCFVFGG 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 PLN02153 237..554 CDD:177814 72/273 (26%)
KELCH repeat 252..298 CDD:276965 15/54 (28%)
Kelch_3 261..310 CDD:290151 17/55 (31%)
Kelch_5 299..>329 CDD:290565 9/30 (30%)
KELCH repeat 302..355 CDD:276965 13/53 (25%)
Kelch_1 358..400 CDD:279660 12/41 (29%)
KELCH repeat 359..407 CDD:276965 15/47 (32%)
KELCH repeat 410..455 CDD:276965 9/44 (20%)
Kelch_1 410..452 CDD:279660 8/41 (20%)
Kelch_1 466..509 CDD:279660 9/33 (27%)
KELCH repeat 467..509 CDD:276965 9/32 (28%)
BTB 564..704 CDD:279045
BTB 575..707 CDD:197585
SPOP_C_like 707..766 CDD:269810
BTB 798..898 CDD:279045
BTB 802..902 CDD:197585
SPOP_C_like 902..960 CDD:269810
rabepkNP_001002209.1 Kelch 1 54..102 14/57 (25%)
Kelch 2 105..156 17/51 (33%)
KELCH repeat 149..199 CDD:276965 13/53 (25%)
Kelch_3 159..211 CDD:290151 13/55 (24%)
Kelch 3 162..210 12/51 (24%)
KELCH repeat 203..250 CDD:276965 15/47 (32%)
Kelch_1 203..243 CDD:279660 12/40 (30%)
Kelch 4 214..263 15/49 (31%)
KELCH repeat 253..293 CDD:276965 8/39 (21%)
Kelch_3 262..311 CDD:290151 15/55 (27%)
Kelch 5 264..313 15/55 (27%)
Kelch 6 328..351 4/7 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1494
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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