DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lztr1 and rabepk

DIOPT Version :10

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:XP_002941691.1 Gene:rabepk / 100492747 XenbaseID:XB-GENE-1009616 Length:364 Species:Xenopus tropicalis


Alignment Length:329 Identity:80/329 - (24%)
Similarity:123/329 - (37%) Gaps:84/329 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 THQWTRMLECAEFVGAKRSKHTVV-------AYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRA 292
            |..|..::...|...| |..||.:       :.|..:.|.||.:.....:|:....:.:..|...
 Frog    15 TSTWYALVPRGEGPSA-RVGHTCMYVPSSEDSSKGKVLVLGGADPSGCFSDIYMIDLDNHEWDNP 78

  Fly   293 CATGTPPAPRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFQSAMWVEWKFSGRQPV 357
            ...|.  .|||.|::.:                                          |||.| 
 Frog    79 DLEGL--LPRYEHASFI------------------------------------------SGRSP- 98

  Fly   358 PRSAHGAAVYDNKMWIYAGYDGNARLNDMWTLNLTGENQWEEVDQLGDRPPTCCNFPVAVA--RD 420
                       ..:|::||.:.....|.:..|| .|...|:. .::|..||:...|..:.|  .|
 Frog    99 -----------GNIWVFAGAEQAENRNCVQVLN-PGMPSWKS-PKVGGTPPSPRTFHTSSASIED 150

  Fly   421 AMYVF-SGQSGLQ-ITN-SLFEFHFKTRTWRRISNEPVLRGATSAPPSRRYGHTMVHHDRFLYVF 482
            .:||| .|:.|.: :|: :|:.:.....||    .:||..|   .||..|:||.:......|||.
 Frog   151 KLYVFGGGEKGAEPVTDTNLYIYDAANMTW----TQPVTSG---DPPQARHGHVVTAVGSKLYVH 208

  Fly   483 GGSADSTLPNDLHCYDLDSQVWSVIQPEQNSDVPSGRVFHASAVICDAMYIFGGTVD----NSVR 543
            ||.|.||...|:.|.|.|:..|..::.:  .|:|.....|:|......:|||||...    ||:.
 Frog   209 GGMAGSTFFKDMFCIDTDTMKWECLKTK--GDLPPACAAHSSVAWKSYIYIFGGMTSTGATNSMY 271

  Fly   544 RGDT 547
            |.||
 Frog   272 RYDT 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 NanM 252..551 CDD:442289 76/312 (24%)
KELCH repeat 252..298 CDD:276965 10/52 (19%)
KELCH repeat 302..355 CDD:276965 5/52 (10%)
KELCH repeat 359..407 CDD:276965 9/47 (19%)
KELCH repeat 410..455 CDD:276965 12/49 (24%)
KELCH repeat 467..509 CDD:276965 16/41 (39%)
BTB1_POZ_LZTR1 551..704 CDD:349617
BACK1_LZTR1 708..766 CDD:350580
BTB2_POZ_LZTR1 781..906 CDD:349618
BACK2_LZTR1 902..962 CDD:350581
rabepkXP_002941691.1 NanM 13..266 CDD:442289 75/318 (24%)
KELCH repeat 31..83 CDD:276965 9/51 (18%)
KELCH repeat 86..128 CDD:276965 15/96 (16%)
KELCH repeat 139..189 CDD:276965 15/56 (27%)
KELCH repeat 193..240 CDD:276965 17/48 (35%)
NanM 234..>302 CDD:442289 14/44 (32%)
KELCH repeat 243..283 CDD:276965 12/33 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.