DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lztr1 and klhdc2

DIOPT Version :9

Sequence 1:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_001096337.1 Gene:klhdc2 / 100124923 XenbaseID:XB-GENE-1006177 Length:159 Species:Xenopus tropicalis


Alignment Length:119 Identity:34/119 - (28%)
Similarity:56/119 - (47%) Gaps:15/119 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 PAPRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTN-------KNDLFEYKFQSAMWVEWKFSGRQP 356
            ||.|..|.||..|.|:|::|||     .|:.:..       :::::.|..::..|...|..|..|
 Frog    32 PAERSGHVAVTDGQSIFVWGGY-----KNAPVRGFYDFYLPRDEIWIYDMENGSWQRVKTKGEIP 91

  Fly   357 VPRSAHGAAVYDNKMWIYAGYDGNARLNDMWTLNLT---GENQWEEVDQLGDRP 407
            :..|...||..|..::::.|:..:...|..:.|||.   |:..||:||..|..|
 Frog    92 LSMSGSCAACVDKVLYLFGGHHAHGNTNMFYMLNLNPRDGDLFWEKVDCKGIPP 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lztr1NP_001259114.1 PLN02153 237..554 CDD:177814 34/119 (29%)
KELCH repeat 252..298 CDD:276965
Kelch_3 261..310 CDD:290151 6/10 (60%)
Kelch_5 299..>329 CDD:290565 13/29 (45%)
KELCH repeat 302..355 CDD:276965 15/59 (25%)
Kelch_1 358..400 CDD:279660 12/44 (27%)
KELCH repeat 359..407 CDD:276965 15/50 (30%)
KELCH repeat 410..455 CDD:276965
Kelch_1 410..452 CDD:279660
Kelch_1 466..509 CDD:279660
KELCH repeat 467..509 CDD:276965
BTB 564..704 CDD:279045
BTB 575..707 CDD:197585
SPOP_C_like 707..766 CDD:269810
BTB 798..898 CDD:279045
BTB 802..902 CDD:197585
SPOP_C_like 902..960 CDD:269810
klhdc2NP_001096337.1 PLN02193 <32..>122 CDD:330882 24/94 (26%)
KELCH repeat 35..91 CDD:276965 15/60 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1263405at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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