DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec22 and Ykt6

DIOPT Version :9

Sequence 1:NP_001259103.1 Gene:Sec22 / 31030 FlyBaseID:FBgn0260855 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_113880.2 Gene:Ykt6 / 64351 RGDID:70897 Length:198 Species:Rattus norvegicus


Alignment Length:142 Identity:35/142 - (24%)
Similarity:69/142 - (48%) Gaps:9/142 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ARCSIETGPYLFHYLIEND-VCYLVMVDKMYSKRLAFNYLEDLAQEFHANYGRRVNSVTRPY--- 112
            :|.|::...||.|..:.:| :..:|:.|..|..|:||..||.:..||    .::|:.:..|.   
  Rat    55 SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEF----SKQVDRIDWPVGSP 115

  Fly   113 AFIEFDVYIQKAKKQLTDRRRN-ISNINTQLQDVQRIMVQNIDDVLQRGTVLAELDTKTQNLSMM 176
            |.|.:........:....|..: :|.:..:|.:.:.|:...::.:|:||..|.:|.:|::.|...
  Rat   116 ATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQ 180

  Fly   177 SQKYKKDAKLLN 188
            |:.:.|.|:..|
  Rat   181 SKAFYKTARKQN 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec22NP_001259103.1 SNC1 10..192 CDD:227472 35/142 (25%)
Longin 39..105 CDD:290490 16/53 (30%)
R-SNARE_SEC22 132..195 CDD:277219 14/58 (24%)
Ykt6NP_113880.2 SNC1 3..198 CDD:227472 35/142 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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