DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec22 and vamp1b

DIOPT Version :9

Sequence 1:NP_001259103.1 Gene:Sec22 / 31030 FlyBaseID:FBgn0260855 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001002532.1 Gene:vamp1b / 436805 ZFINID:ZDB-GENE-040718-265 Length:118 Species:Danio rerio


Alignment Length:94 Identity:27/94 - (28%)
Similarity:48/94 - (51%) Gaps:15/94 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 TDRRRNISNINTQLQDVQRIMVQNIDDVLQRGTVLAELDTKTQNLSMMSQKYKK-DAKLLNR--- 189
            |...|.:.....|:::|..||..|:|.||:|...|:|||.:...|...:.:::. .|||.|:   
Zfish    28 TTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESCAAKLKNKYWW 92

  Fly   190 ---KSMYVKAMALGMILLVFI----MYFW 211
               |.|.:    :|:|.::|:    :||:
Zfish    93 KNCKMMII----MGVIGVLFVGIIFLYFF 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec22NP_001259103.1 SNC1 10..192 CDD:227472 21/69 (30%)
Longin 39..105 CDD:290490
R-SNARE_SEC22 132..195 CDD:277219 21/69 (30%)
vamp1bNP_001002532.1 Synaptobrevin 30..117 CDD:279324 25/90 (28%)
R-SNARE_VAMP2 32..94 CDD:277223 19/61 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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